diff_gene

Get the differentially expressioned genes using DESeq2 package

Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA)
provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP
and Copy number variation data. It's easy to download data from TCGA using the
gdc tool, but processing these data into a format suitable for bioinformatics
analysis requires more work. This R package was developed to handle these data.

Erqiang Hu

GeoTcgaData

Processing various types of data on GEO and TCGA

diff_gene function

<dl><dt>profile2_input</dt>
<dd>a result of classify_sample</dd></dl>

Arguments

Get the differentially expressioned genes using DESeq2 package — diff_gene

<dl>

<dt>profile2_input</dt>
<dd>a result of classify_sample</dd>

</dl>

diff_gene: Get the differentially expressioned genes using DESeq2 package

Description

Usage

Value

Arguments

Examples