id_conversion_vector

Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA)
provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP
and Copy number variation data. It's easy to download data from TCGA using the
gdc tool, but processing these data into a format suitable for bioinformatics
analysis requires more work. This R package was developed to handle these data.

Erqiang Hu

GeoTcgaData

Processing various types of data on GEO and TCGA

id_conversion_vector function

<dl><dt>from</dt>
<dd>one of `id_ava()`</dd>
<dt>to</dt>
<dd>one of `id_ava()`</dd>
<dt>IDs</dt>
<dd>the gene id which needed to convert</dd>
<dt>na.rm</dt>
<dd>Whether to remove lines containing NA</dd></dl>

Arguments

Gene id conversion — id_conversion_vector

<dl>

<dt>from</dt>
<dd>one of `id_ava()`</dd>


<dt>to</dt>
<dd>one of `id_ava()`</dd>


<dt>IDs</dt>
<dd>the gene id which needed to convert</dd>


<dt>na.rm</dt>
<dd>Whether to remove lines containing NA</dd>

</dl>

id_conversion_vector: Gene id conversion

Description

Usage

Value

Arguments

Examples