tcga_cli_deal

Combine clinical information obtained from TCGA and extract survival data

Gene Expression Omnibus(GEO) and The Cancer Genome Atlas (TCGA)
provide us with a wealth of data, such as RNA-seq, DNA Methylation, SNP
and Copy number variation data. It's easy to download data from TCGA using the
gdc tool, but processing these data into a format suitable for bioinformatics
analysis requires more work. This R package was developed to handle these data.

Erqiang Hu

GeoTcgaData

Processing various types of data on GEO and TCGA

tcga_cli_deal function

<dl><dt>Files_dir</dt>
<dd>a dir data</dd></dl>

Arguments

Combine clinical information obtained from TCGA and extract survival data — tcga_cli_deal

<dl>

<dt>Files_dir</dt>
<dd>a dir data</dd>

</dl>

tcga_cli_deal: Combine clinical information obtained from TCGA and extract survival data

Description

Usage

Value

Arguments

Examples