plot.EscoufierRVrarefy

Creates a confidence interval plot for RV rarefaction results

Tools for geometric morphometric analyses and multidimensional
data. Implements methods for morphological disparity analysis using
bootstrap and rarefaction,
as reviewed in Foote (1997) <doi:10.1146/annurev.ecolsys.28.1.129>.
Includes integration and modularity testing,
following Fruciano et al. (2013) <doi:10.1371/journal.pone.0069376>,
using Escoufier's RV coefficient as test statistic as well as
two-block partial least squares -
PLS, Rohlf and Corti (2000) <doi:10.1080/106351500750049806>.
Also includes vector angle comparisons,
orthogonal projection for data correction
(Burnaby (1966) <doi:10.2307/2528217>; Fruciano (2016) <doi:10.1007/s00427-016-0537-4>),
and parallel analysis for dimensionality reduction (Buja and Eyuboglu (1992)
<doi:10.1207/s15327906mbr2704_2>).

Carmelo Fruciano

GeometricMorphometricsMix

Heterogeneous Methods for Shape and Other Multidimensional Data

plot.EscoufierRVrarefy function

<dl><dt>x</dt>
<dd>An object of class "EscoufierRVrarefy"</dd>
<dt>point_color</dt>
<dd>A single color or a vector of colors for point estimates.
If length 1, the same color is used for all points. If length equals the
number of groups, colors are assigned per group. (default "darkblue")</dd>
<dt>errorbar_color</dt>
<dd>A single color or a vector of colors for error bars.
Follows the same recycling rules as `point_color`. (default "darkred")</dd>
<dt>...</dt>
<dd>Additional arguments passed to the underlying plotting function</dd></dl>

Arguments

Plot method for EscoufierRVrarefy objects — plot.EscoufierRVrarefy

<dl>

<dt>x</dt>
<dd>An object of class "EscoufierRVrarefy"</dd>


<dt>point_color</dt>
<dd>A single color or a vector of colors for point estimates.
If length 1, the same color is used for all points. If length equals the
number of groups, colors are assigned per group. (default "darkblue")</dd>


<dt>errorbar_color</dt>
<dd>A single color or a vector of colors for error bars.
Follows the same recycling rules as `point_color`. (default "darkred")</dd>


<dt>...</dt>
<dd>Additional arguments passed to the underlying plotting function</dd>

</dl>

plot.EscoufierRVrarefy: Plot method for EscoufierRVrarefy objects

Description

Usage

Value

Arguments