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GerminaR

GerminaR is the first platform base in open source package to calculate and graphic the germination indices in R. GerminaR include a web application called "GerminQuant for R" for non programming user.

Citation

Lozano-Isla, Flavio; Benites-Alfaro, Omar Eduardo; Pompelli, Marcelo Francisco (2019). GerminaR: An R package for germination analysis with the interactive web application “GerminaQuant for R.” Ecological Research, 34(2), 339–346. https://doi.org/10.1111/1440-1703.1275

Installation

To install the developing version of this package you need package devtools:

install.packages(devtools)

Then type:

devtools::install_github("Flavjack/GerminaR")

Usage

To load the package type in your computer:

library(GerminaR)

More information in the user manual: https://flavjack.github.io/germinaquant/

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Version

Install

install.packages('GerminaR')

Monthly Downloads

394

Version

1.4.2

License

MIT + file LICENSE

Maintainer

Flavio Lozano-Isla

Last Published

March 28th, 2020

Functions in GerminaR (1.4.2)

ger_GSP

Germination Speed
ger_GRP

Germination Seed Percentage
ger_summary

Summary of Germination indices
ger_MGR

Mean Germination Rate
ger_MGT

Mean Germination Time
ger_testcomp

Multiple comparison test
ger_getdata

Import google spreadsheet or xlsx file
metamorphosis

Transform dataframe based in a dictionary
ger_intime

Cumulative sum of germination by period of time for line graphic
osmp

Osmotic potential calculator
ger_boxp

Boxplot graphic
ger_UNC

Germination Uncertainty
ger_SDG

Standard deviation of the Mean Germination Time
dtsm

Mean Comparison Table Summary
ger_VGT

Variance of the Mean Germination Time
ger_cumsum

Cumulative sum of germination matrix
plot_gr

Plot line or bar graphic
prosopis

Germination under different osmotic potentials and temperatures.
reexports

Objects exported from other packages
ger_linereg

Plot line regression
ger_leq

Regresion line equation
ger_SYN

Germination Synchronization Index
rep_row

Repeated Rows in a data matrix
web_table

HTML tables for markdown documents
stat_sm

Descriptive Statistics for a model
fplot

Plot line or bar graphic
GerminaQuant

@description GermiQuant for R app allows make the calculation for the germination indices incredibly easy in a interactive applications build in base a GerminaR R package and Shiny. GermiQuant app is live!. Outputs change instantly as users modify inputs, without requiring a reload the app. The principal features of the application allow calculate the principal germination indices, statistical analysis and easy way to plot the results.
ger_CVG

Coefficient of Variance of the Mean Germination Time
evalDays

Select Evaluation Days
ger_GRS

Germinated Seed Number
ger_ASG

ArcSin of Germination Percentage
evalFactor

Select Factors of germination matrix