Ghat (version 0.2.0)

Maize_wqs: The Wisconsin Quality Synthetic (WQS) maize population datasets.

Description

The Wisconsin Quality Synthetic (WQS) maize population datasets.

Usage

Maize_wqs

Format

A list of 4 data sets:

Dataset-1

Data frame including all SNP effects and changes in allele frequencies between cycle 2 and 5.

Dataset-2

BLUP breeding values for Acid Detergent Fiber (ADF) involving 5 generations of selection.

Dataset-3

Map file: Each line of the Map file describes a single marker and must contain at least three columns. 1: chromosome number; 2: SNP (snp id); 3: SNP position (in base-pairs (bp)).

Dataset-4

Maize Genotype (Illumina MaizeSNP50 BeadChip); an Infinium HD assay (Illumina, Inc. San Diego, CA). 10,017 SNP markers (0,1 and 2) after filtration, distributed across the maize genome (Ganal et al.2011).

Examples

maize <- Maize_wqs[[1]]
phe   <- Maize_wqs[[2]]
map   <- Maize_wqs[[3]]
gen   <- Maize_wqs[[4]]