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GhostKnockoff (version 0.1.0)

The Knockoff Inference Using Summary Statistics

Description

Functions for multiple knockoff inference using summary statistics, e.g. Z-scores. The knockoff inference is a general procedure for controlling the false discovery rate (FDR) when performing variable selection. This package provides a procedure which performs knockoff inference without ever constructing individual knockoffs (GhostKnockoff). It additionally supports multiple knockoff inference for improved stability and reproducibility. Moreover, it supports meta-analysis of multiple overlapping studies.

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Version

Install

install.packages('GhostKnockoff')

Monthly Downloads

194

Version

0.1.0

License

GPL-3

Maintainer

Zihuai He

Last Published

November 23rd, 2021

Functions in GhostKnockoff (0.1.0)

GhostKnockoff.prelim.Meta

Additional preliminary data management for GhostKnockoff if multiple studies are involved
GhostKnockoff.prelim

Preliminary data management for GhostKnockoff
GhostKnockoff.filter

GhostKnockoff filter
GhostKnockoff.GetCorStudy

Calculate study correlation
GhostKnockoff.fit

Feature importance score generator