Glimma (version 1.0.0)

glMDSPlot: Glimma MDS Plot

Description

Draw an interactive MDS plot gene expression matrix with distances calculated from most variable genes.

Usage

glMDSPlot(x, ...)

Arguments

x

the data.frame containing data to plot.

...

additional arguments affecting the plots produced. See specific methods for detailed arguments.

Value

Draws a two-panel interactive MDS plot in an html page. The left panel contains the plot between two MDS dimensions, with annotations displayed on hover. The right panel contains a bar plot of the eigenvalues of each dimension, clicking on any of the bars will plot the corresponding dimension against the next dimension.

See Also

glMDSPlot.default, glMDSPlot.DGEList

Examples

data(lymphomaRNAseq)
genotype <- relevel(lymphomaRNAseq$samples$group, "Smchd1-null")

glMDSPlot(lymphomaRNAseq, labels=1:7, groups=genotype)