Usage
"glMDSPlot"(x, top = 500, labels = 1:ncol(x), groups = rep(1, ncol(x)), gene.selection = "pairwise", main = "MDS Plot", path = getwd(), folder = "glimma-plots", html = "MDS-Plot", launch = TRUE, ...)
Arguments
x
the matrix containing the gene expressions.
top
the number of top most variable genes to use.
labels
the labels for each sample.
groups
the experimental group to which samples belong.
gene.selection
"pairwise" if most variable genes are to be chosen for each pair of samples or "common" to select the same genes for all comparisons.
main
the title of the plot.
path
the path in which the folder will be created.
folder
the name of the fold to save html file to.
html
the name of the html file to save plots to.
launch
TRUE to launch plot after call.