thresholdPlot

Plot a selected image from the image stack with values below threshold set to black (grayscale = 0). Can be used to select threshold and cutoff values used in good.fibes.

Reconstruction of muscle fibers from image stacks using textural analysis. Includes functions for tracking, smoothing, cleaning, plotting and exporting muscle fibers. Also calculates basic fiber properties (e.g., length and curvature).

J. Arbour

GoodFibes

Detection and Reconstruction of Muscle Fibers from diceCT Image
Data

Jessica Arbour

thresholdPlot function

<dl> <dt>images</dt>
<dd>A character vector of image stack file names. Generated with list.files</dd> <dt>n</dt>
<dd>The number of the selected image in the vector "images"</dd> <dt>threshold</dt>
<dd>The cutoff value for grayscale values. All voxels with grayscales below threshold will be displayed as black.</dd></dl>

Arguments

Author

Plot image from diceCT stack using thresholding — thresholdPlot

<dl>

 <dt>images</dt>
<dd>A character vector of image stack file names. Generated with list.files</dd>

 <dt>n</dt>
<dd>The number of the selected image in the vector "images"</dd>

 <dt>threshold</dt>
<dd>The cutoff value for grayscale values. All voxels with grayscales below threshold will be displayed as black.</dd>

</dl>

thresholdPlot: Plot image from diceCT stack using thresholding

Description

Usage

Value

Arguments

Author

References

See Also

Examples