fibers.smoothed

Applies splines to smooth the stepwise fiber paths produced by good.fibes, with the function ns from splines.

Reconstruction of muscle fibers from image stacks using textural analysis. Includes functions for tracking, smoothing, cleaning, plotting and exporting muscle fibers. Also calculates basic fiber properties (e.g., length and curvature).

J. Arbour

GoodFibes

Detection and Reconstruction of Muscle Fibers from diceCT Image
Data

Jessica Arbour

fibers.smoothed function

<dl> <dt>fib.list</dt>
<dd>A list of fibers with $fiber.points, produced by <code>good.fibes</code> or one of the cleaning and processing functions (e.g., fuse.fibers).</dd> <dt>df</dt>
<dd>The degrees of freedom passed to splines2::nsp. Knots equal to df - 1 - intercept are set as breakpoints in the spline curve. A straight line path has a df of 1.</dd></dl>

Arguments

Author

Smoothing of estimated fiber paths — fibers.smoothed

<dl>

 <dt>fib.list</dt>
<dd>A list of fibers with $fiber.points, produced by <code>good.fibes</code> or one of the cleaning and processing functions (e.g., fuse.fibers).</dd>

 <dt>df</dt>
<dd>The degrees of freedom passed to splines2::nsp. Knots equal to df - 1 - intercept are set as breakpoints in the spline curve. A straight line path has a df of 1.</dd>

</dl>

fibers.smoothed: Smoothing of estimated fiber paths

Description

Usage

Value

Arguments

Author

References

See Also