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GraphAT (version 1.44.0)

Graph Theoretic Association Tests

Description

Functions and data used in Balasubramanian, et al. (2004)

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Version

Version

1.44.0

License

LGPL

Maintainer

Thomas LaFramboise

Last Published

February 15th, 2017

Functions in GraphAT (1.44.0)

Phenoclusters

Yeast Gene-Knockout Fitness Data Cluster Memberships
cellcycle

Cell-Cycle Cluster Matrix
mat2UndirG

Change graph representations
mRNAclusters

Yeast mRNA Expression Data Cluster Memberships
depthmat

Matrices of depth of association for pairs of YEAST genes with respect to each of the BP,CC and MF ontologies of the GO database
makeClustM

Make an adjacency matrix for a cluster graph
perms

Randomly permute edges or node labels in a graph
clust2Mat

Function to compute adjacency matrix of cluster graph given a vector of cluster memberships
giaever

Yeast Gene-Knockout Fitness Data
permPower

Function to compute estimated probability of detecting preferential connection of intracluster nodes
causton

Yeast mRNA Expression Data
getpvalue

Function to obtain P values from the Edge permutation and Node permutation tests respectively