rTests.base

Internal function used by <code>RISE</code> once a rank/graph matrix \(R\) is constructed.
It computes the within-group sums, asymptotic covariance, quadratic statistic,
and (optionally) permutation-based p-value.

internal

Implements the Rank In Similarity Graph Edge-count two-sample test
(RISE) for high-dimensional and non-Euclidean data.
The method constructs similarity-based graphs, such as k-nearest neighbor graph (k-NNG),
k-minimum spanning tree (k-MST), and k-minimum distance non-bipartite pairing (k-MDP),
and evaluates rank-based within-sample edge counts
with asymptotic and permutation p-values.
For methodological details, see Zhou and Chen (2023)
<https://proceedings.mlr.press/v195/zhou23a.html>.

Doudou Zhou

GraphRankTest

Rank in Similarity Graph Edge-Count Two-Sample Test (RISE)

Hao Chen

rTests.base function

<dl><dt>R</dt>
<dd>Symmetric nonnegative matrix (N x N) with zero diagonal.</dd>
<dt>sample1ID</dt>
<dd>Integer indices for group X.</dd>
<dt>sample2ID</dt>
<dd>Integer indices for group Y.</dd>
<dt>perm</dt>
<dd>Integer permutations for permutation p-value (default 0).</dd></dl>

Arguments

Core Test on a Given Rank/Graph Matrix R — rTests.base

<dl>

<dt>R</dt>
<dd>Symmetric nonnegative matrix (N x N) with zero diagonal.</dd>


<dt>sample1ID</dt>
<dd>Integer indices for group X.</dd>


<dt>sample2ID</dt>
<dd>Integer indices for group Y.</dd>


<dt>perm</dt>
<dd>Integer permutations for permutation p-value (default 0).</dd>

</dl>

rTests.base: Core Test on a Given Rank/Graph Matrix R

Description

Usage

Value

Arguments