makeGreyList

makeGreyList,GreyList-method

The <code>GreyList</code> object to create the list
             for.

If the distance between neighbouring grey regions is less than
                or equal to <code>maxGap</code>, the regions will be merged into
                one big region.

maxGap


  Create the actual grey list, based on the threshold calculated by
  <code>calcThreshold</code> and the read counts from <code>countReads</code>.


methods

makeGreyList-methods

Identify regions of ChIP experiments with high signal in
the input, that lead to spurious peaks during peak calling.
Remove reads aligning to these regions prior to peak calling,
for cleaner ChIP analysis.

Gordon Brown

GreyListChIP

Grey Lists -- Mask Artefact Regions Based on ChIP Inputs

makeGreyList-methods function

The <code><linkS4class>GreyList</linkS4class></code> object to create the list
             for.

Create the actual grey list, based on the threshold calculated by
  <code>calcThreshold</code> and the read counts from <code>countReads</code>.

makeGreyList-methods: Generate a grey list from a `GreyList` object

Description

Usage

Arguments

Value

Details

See Also

Examples