volcanoGsea
volcanoGsea(
data = NULL,
NES.cutoff = 1,
pvalue.cutoff = NULL,
p.adjust.CUTOFF = 0.05,
nudge.y = c(0, 0),
topN = 5,
point.size = 3,
point.color = c("#CC3333", "#CCCCCC", "#0099CC"),
...
)a ggplot object.
GSEA enrich object from clusterProfiler, defalut is NULL.
NES cutoff to select significant terms, defalut is 1.
pvalue cutoff to select significant terms, defalut is NULL.
adjusted pvalue cutoff to select significant terms, defalut is 0.05.
y shift to ajust label, defalut is c(0,0).
top term to show, defalut is 5.
point size, defalut is 3.
point color, defalut is c('#CC3333','#CCCCCC','#0099CC').
other arguments passed by geom_text_repel.
Jun Zhang