HACSim v1.0.1
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Iterative Extrapolation of Species' Haplotype Accumulation Curves
Performs iterative extrapolation of species' haplotype accumulation curves using a nonparametric stochastic (Monte Carlo) optimization method for assessment of specimen sampling completeness based on the approach of Phillips et al. (2015) <doi:10.1515/dna-2015-0008> and Phillips et al. (2019) <doi:10.1002/ece3.4757>.
Functions in HACSim
| Name | Description | |
| HACClass | Internal R code | |
| accumulate | Internal C++ code | |
| envr | Simulation variable storage environment | |
| HACReal | Set up an object to simulate haplotype accumulation curves for a real species | |
| HACSim-package | HACSim | |
| HAC.sim | Internal R code | |
| HAC.simrep | Run a simulation of haplotype accumulation curves for hypothetical or real species | |
| HACHypothetical | Set up an object to simulate haplotype accumulation curves for a hypothetical species | |
| No Results! | ||
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Details
| Type | Package |
| Date | 2019-05-15 |
| License | GPL-3 |
| NeedsCompilation | yes |
| LinkingTo | Rcpp, RcppArmadillo |
| RoxygenNote | 6.1.1 |
| Packaged | 2019-05-15 20:17:31 UTC; jarrettphillips |
| Repository | CRAN |
| Date/Publication | 2019-05-15 23:00:03 UTC |
| imports | ape (>= 5.2) , graphics (>= 3.5.1) , pegas (>= 0.11) , Rcpp (>= 1.0.0) , stats (>= 3.5.1) , utils (>= 3.5.1) |
| linkingto | RcppArmadillo |
| Contributors | Jarrett Phillips, Steven French |
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