HACSim v1.0.1

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Iterative Extrapolation of Species' Haplotype Accumulation Curves

Performs iterative extrapolation of species' haplotype accumulation curves using a nonparametric stochastic (Monte Carlo) optimization method for assessment of specimen sampling completeness based on the approach of Phillips et al. (2015) <doi:10.1515/dna-2015-0008> and Phillips et al. (2019) <doi:10.1002/ece3.4757>.

Functions in HACSim

Name Description
HACClass Internal R code
accumulate Internal C++ code
envr Simulation variable storage environment
HACReal Set up an object to simulate haplotype accumulation curves for a real species
HACSim-package HACSim
HAC.sim Internal R code
HAC.simrep Run a simulation of haplotype accumulation curves for hypothetical or real species
HACHypothetical Set up an object to simulate haplotype accumulation curves for a hypothetical species
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Details

Type Package
Date 2019-05-15
License GPL-3
NeedsCompilation yes
LinkingTo Rcpp, RcppArmadillo
RoxygenNote 6.1.1
Packaged 2019-05-15 20:17:31 UTC; jarrettphillips
Repository CRAN
Date/Publication 2019-05-15 23:00:03 UTC

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