HAP.ROR (version 1.0)

collapse: group assignment

Description

function for assign group info to samples after collapsing

Usage

collapse(case, ctl, lib, names, snp.de = -1)

Arguments

case

case samples: 1st_col=haplotype_1, 2nd_col=haplotype_2

ctl

control samples: 1st_col=haplotype_1, 2nd_col=haplotype_2

lib

the tag-SNPs library *.4d with the only alleles appear in sample

names

corresponding allele names in the same format as appear in sample

snp.de

the column position of a list of SNPs to be deleted, default no delete