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HAPim (version 1.3)

HAPim-package: HAPim

Description

The package provides a set of functions whose aim is to propose 4 methods of QTL detection:

-HAPimLD is an interval-mapping method designed for unrelated individuals with no family information that makes use of linkage disequilibrium.

-HAPimLDL is an interval-mapping method for design of half-sib families. It combines linkage analysis and linkage disequilibrium.

-HaploMax is based on an analysis of variance with a dose haplotype effect.

-HaploMaxHS is based on an analysis of variance with a sire effect and a dose haplotype effect in half-sib family design.

Fundings for the package development were provided to the LDLmapQTL project by the ANR GENANIMAL program and APIS-GENE.

Arguments

Details

Package:
HAPim
Type:
Package
Version:
1.3
Date:
2009-10-12
License:
none

References

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.