The function calculates allelic frequencies by marker given a set of haplotypes.
It can be viewed as an internal function.
The user does not have to call it by himself.
Usage
freq.all(hap)
Arguments
hap
numeric matrix (number of individuals x number of markers) which contains the haplotype of individuals.
Value
The returned value is a list of n elements (n=number of markers) which
gives the allelic frequencies by marker, ranged in ascending order of allele index.
References
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert,
T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin.
Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.