obj.haplomax.add

numeric vector of length=number of individuals which contains the performances of individuals.

perf

numeric vector of length=number of individuals which contains the CD of individuals. var(perf$_i$)=s/CD$^2_i$

assoc

results provided by <code>structure.hap()</code> function, list of objects.

res.structure

provided by <code>pi.hap()</code> function, list of numeric objects.

pi.hap

provided by <code>corresp()</code> function, list of numeric objects.

cor.pere

cor.mere


The function computes the  regression analysis with a dose haplotype effect. 
It can be viewed as an internal function. 
The user does not have to call it by himself.


models

The package provides a set of functions whose aim is to
propose 4 methods of QTL detection. HAPimLD is an
interval-mapping method designed for unrelated individuals with
no family information that makes use of linkage disequilibrium.
HAPimLDL is an interval-mapping method for design of half-sib
families. It combines linkage analysis and linkage
disequilibrium. HaploMax is based on an analysis of variance
with a dose haplotype effect. HaploMaxHS is based on an
analysis of variance with a sire effect and a dose haplotype
effect in half-sib family design.  Fundings for the package
development were provided to the LDLmapQTL project by the ANR
GENANIMAL program and APIS-GENE.

obj.haplomax.add: analysis of variance of the HaploMax method

Description

Usage

Arguments

Value

References

See Also