This function computes the frequencies of each haplotype.
The function can be viewed as an internal function.
The user does not have to call it by himself.
Usage
pi.hap(freq.marq, res.structure)
Arguments
freq.marq
results provided by freq.all() function, list of numeric objects which contains the allele frequencies.
res.structure
results provided by structure.hap() function, list of objects.
Value
The returned value is a list of numeric vectors containing haplotypes freqencies estimated under marker independency.
References
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert,
T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin.
Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.