HAPim (version 1.3)

proba.DL: conditional probabilities

Description

The function calculates conditional probabilities of having Q allele given marker information due to linkage disequilibrium.

Usage

proba.DL(piQ.t0, esp.freq.hap, res.structure, pi.hap, res.corresp)

Arguments

piQ.t0

frequency of Q allele at time t=0.

esp.freq.hap

results provided by esp.freq.hap() function, numeric vector.

res.structure

results provided by structure.hap() function, list of numeric objects.

pi.hap

provided by pi.hap() function, list of numeric objects.

res.corresp

results provided by corresp() function, list of 2 numeric objects.

Value

The returned value is a numeric vector of length=number of individuals which contains conditional probabilities of having Q allele given marker information due to linkage disequilibrium.

References

publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert, T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin. Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.

See Also

esp.freq.hap, structure.hap, pi.hap, corresp