The function finds alleles of the associated haplotype.
It can be viewed as an internal function.
The user does not have to call it by himself.
Usage
retrouve.all(assoc, res.structure, all.marq)
Arguments
assoc
numeric value, associated haplotype.
res.structure
results provided by structure.hap() function, list of objects.
all.marq
results provided by allele.marq() function, list of alleles for each marker.
Value
The returned value is a character which corresponds to the concatenation of alleles of the associated haplotype.
References
publication to be submitted: C. Cierco-Ayrolles, S. Dejean, A. Legarra, H. Gilbert,
T. Druet, F. Ytournel, D. Estivals, N. Oumouhou and B. Mangin.
Combining linkage analysis and linkage disequilibrium for QTL fine mapping in animal pedigrees.