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HDSpatialScan (version 1.0.5)

Multivariate and Functional Spatial Scan Statistics

Description

Allows to detect spatial clusters of abnormal values on multivariate or functional data (Frévent et al. (2022) ). See also: Frévent et al. (2023) , Smida et al. (2022) , Frévent et al. (2021) . Cucala et al. (2019) , Cucala et al. (2017) , Jung and Cho (2015) , Kulldorff et al. (2009) .

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Version

Install

install.packages('HDSpatialScan')

Monthly Downloads

147

Version

1.0.5

License

GPL-3

Maintainer

Camille FREVENT

Last Published

June 5th, 2025

Functions in HDSpatialScan (1.0.5)

PFSS scan procedure

ResScanOutputMulti

Constructor function for objects of the ResScanOutputMulti class

ResScanOutputUniFunct

Constructor function for objects of the ResScanOutputUniFunct class

Constructor function for objects of the ResScanOutput class

Spatial scan procedure

Univariate functional data

Spatial object corresponding to the sites of the data of the package HDSpatialScan

dfree_index_multi

Index for the MDFFSS scan procedure

Index for the MNP scan procedure

Permutates the data

Multivariate functional data

URBFSS scan procedure

Creation of the matrix of potential clusters

multi_signs_matrix

List of matrix of signs (multivariate functional data)

Index for the UG scan procedure

Return only the detected clusters with no overlapping in their order of detection

pointwise_wmw_uni

Index for the URBFSS scan procedure

plotSummary.ResScanOutputUniFunct

Plots the mean or median curves in the clusters detected by a univariate functional scan procedure (PFSS, NPFSS, DFFSS or URBFSS)

plot.ResScanOutput

Schema or map of the clusters

Map of circular clusters

Generic function to plot curves

Multivariate non-functional data

plotSummary.ResScanOutputMultiFunct

Plots the mean or median curves in the clusters detected by a multivariate functional scan procedure (MPFSS, NPFSS, MDFFSS or MRBFSS)

plotSummary.ResScanOutputMulti

Plots the mean or median spider chart of the clusters detected by a multivariate scan function (MG or MNP)

post_filt_nb_sites

A posteriori filtering on the number of sites/individuals

plotCurves.ResScanOutputUniFunct

Plots the curves in the clusters detected by the univariate functional scan functions (PFSS, NPFSS, DFFSS or URBFSS)

A posteriori filtering on the area

Index for the NPFSS scan procedure (multivariate functional case)

Index for the MG scan procedure

plotCurves.ResScanOutputMultiFunct

Plots the curves in the clusters detected by the multivariate functional scan functions (MPFSS, NPFSS, MDFFSS or MRBFSS)

uni_signs_matrix

Computation of the matrix of signs

Index for the NPFSS scan procedure (univariate functional case)

summary.ResScanOutputUniFunct

Summary of the clusters obtained with a univariate functional scan function (PFSS, NPFSS, DFFSS or URBFSS).

pointwise_wmw_multi

Index for the MRBFSS scan procedure

Index for the UNP scan procedure

pointwise_dfree

Index for the DFFSS scan procedure

Generic function to plot a summary

post_filt_radius

A posteriori filtering on the radius

print.ResScanOutput

Prints a result of a scan procedure

summary.ResScanOutputMulti

Summary of the clusters obtained with a multivariate scan function (MG or MNP).

Map of the clusters

Schema of the clusters

summary.ResScanOutputMultiFunct

Summary of the clusters obtained with a multivariate functional scan function (MPFSS, NPFSS, MDFFSS or MRBFSS).

summary.ResScanOutputUni

Summary of the clusters obtained with a univariate scan function (UG or UNP).

Computation of the multivariate functional ranks

MG scan procedure

Initalization of the scan procedures by creating the matrix of potential clusters

HDSpatialScan-package

Multivariate and Functional Spatial Scan Statistics

MRBFSS scan procedure

MDFFSS scan procedure

MPFSS scan procedure

Finalization of the scan procedures

NPFSS scan procedure (univariate functional or multivariate functional)

DFFSS scan procedure

MNP scan procedure

ResScanOutputMultiFunct

Constructor function for objects of the ResScanOutputMultiFunct class

UG scan procedure

ResScanOutputUni

Constructor function for objects of the ResScanOutputUni class

UNP scan procedure