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HDTD (version 1.6.0)

Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (HDTD)

Description

Characterization of intra-individual variability using physiologically relevant measurements provides important insights into fundamental biological questions ranging from cell type identity to tumor development. For each individual, the data measurements can be written as a matrix with the different subsamples of the individual recorded in the columns and the different phenotypic units recorded in the rows. Datasets of this type are called high-dimensional transposable data. The HDTD package provides functions for conducting statistical inference for the mean relationship between the row and column variables and for the covariance structure within and between the row and column variables.

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Version

Version

1.6.0

License

GPL-3

Maintainer

Anestis Touloumis

Last Published

February 15th, 2017

Functions in HDTD (1.6.0)

transposedata

Interchanging the Row and Column Variables in Transposable Data
orderdata

Reordering Row and Column Variables
covmat.ts

Nonparametric Tests for the Row or Column Covariance Matrix
HDTD-package

Estimation and Hypothesis Testing in High-Dimensional Transposable Data
covmat.hat

Estimation of the Row and of the Column Covariance Matrices.
meanmat.hat

Estimation the Mean Matrix
VEGFmouse

Vascular Endothelial Growth Factor Mouse Dataset
meanmat.ts

Nonparametric Tests for the Mean Matrix
centerdata

Centering Transposable Data