HDXBoxeR (version 0.0.2)

heat_map_tp: Preparatory function for heat map

Description

Returns heat map

Usage

heat_map_tp(
  df,
  pv,
  sd,
  ranges = c(-Inf, seq(-30, 30, by = 10), Inf),
  pv_cutoff = 0.01,
  replicates = 3
)

Value

heat map for timepoints

Arguments

df

average data frame. Generated using ave_timepoint() function.

pv

pvalues dataframes calculated using pv_timepoint() function

sd

standard deviation data.frame generated using sd_timepoint function

ranges

ranges for coloring scheme. Default set to c(-Inf, seq(-30, 30, by=10), Inf)

pv_cutoff

p-value cutoff here set up to 0.01

replicates

number of replicates in sample. Default set to 3.