readPairs-methods: Read Nimblegen .pair files (methods)
Description
Methods for extracting data from corresponding files in the Nimblegen .pair format.
Methods
- x = "missing", y = "missing", z = "missing"
- Handle empty function call
- x = "vector", y = "missing", z = "missing"
- Handle single vector input. If two values specified in vector, reinterpret function call with two character inputs. Otherwise, handle as empty function call.
- x = "vector", y = "vector", z = "missing"
- Handle two vector input. If vectors of unit length, reinterpret function call with two character inputs. Otherwise, handle as improper function call.
- x = "character", y = "character", z = "ExpressionSet"
- Handle two character vector inputs, each specifiying a filename to use when reading pair information. Pair data will be written to an
ExpressionSet object. - x = "character", y = "character", z = "character"
- Handle two character vector inputs, each specifiying a filename to use when reading pair information. Pair data will be written to a database.