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HGNChelper (version 0.8.14)

Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols

Description

Contains functions for identifying and correcting HGNC human gene symbols and MGI mouse gene symbols which have been converted to date format by Excel, withdrawn, or aliased. Also contains functions for reversibly converting between HGNC symbols and valid R names.

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Version

Install

install.packages('HGNChelper')

Monthly Downloads

2,100

Version

0.8.14

License

GPL (>= 2.0)

Issues

4

Pull Requests

0

Stars

58

Forks

10

Maintainer

Levi Waldron

Last Published

May 18th, 2024

Functions in HGNChelper (0.8.14)

hgnc.table

All current and withdrawn HGNC gene symbols and Excel-mogrified symbols
rToSymbol

Title function to reverse the conversion made by symbolToR
checkGeneSymbols

Identify outdated or Excel-mogrified gene symbols
rToAffy

Title function to convert the output of affyToR back to the original Affymetrix probeset identifiers.
getCurrentMaps

Get the current maps for correcting gene symbols
symbolToR

Title function to *reversibly* convert HGNC gene symbols to valid R names.
affyToR

Title function to convert Affymetrix probeset identifiers to valid R names
findExcelGeneSymbols

Title function to identify Excel-mogrified gene symbols
mouse.table

All current and withdrawn MGI mouse symbols and Excel-mogrified symbols
HGNChelper-package

HGNChelper: Identify and Correct Invalid HGNC Human Gene Symbols and MGI Mouse Gene Symbols