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HH (version 3.1-15)

Statistical Analysis and Data Display: Heiberger and Holland

Description

Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

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Version

Install

install.packages('HH')

Monthly Downloads

6,252

Version

3.1-15

License

GPL (>= 2)

Maintainer

Richard Heiberger

Last Published

February 16th, 2015

Functions in HH (3.1-15)

aovSufficient

Analysis of variance from sufficient statistics for groups.
defunct

Defunct Functions in Package 'HH'
as.matrix.listOfNamedMatrices

Convert a list of matrices to a single matrix
HH.regsubsets

Display tabular results for Best Subsets Regression.
lmatRows

Find the row numbers in the lmat corresponding to the focus factor.
as.vector.trellis

Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object.
ResizeEtc.likertPlot

Display multiple independent trellis objects, representing likert plots, on the same coordinated scale.
residVSfitted

Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat
mmc

MMC (Mean--mean Multiple Comparisons) plots.
AEdotplot.data.frame

AE (Adverse Events) dotplot of incidence and relative risk, support functions
hov

Homogeneity of Variance
ResizeEtc

Display multiple independent trellis objects on the same coordinated scale.
X.residuals

Residuals from the regression of each column of a data.frame against all the other columns.
anovaMean

ANOVA table from the group sample sizes, means, and standard deviations.
glhtWithMCP.993

Retain averaging behavior that was previously available in glht.
diagplot5new

Transpose of ECDF for centered fitted values and residuals from a linear model.
ancova

Compute and plot oneway analysis of covariance
cplx

Generate a sequence spanning the xlim of a lattice window.
summary.arma.loop

summary and print and subscript methods for tsdiagplot and related objects.
print.NormalAndTplot

Print method for Normal and t plots from NTplot.
pyramidLikert

Print a Likert plot as a Population Triangle
lmplot

Four types of residual plots for linear models.
likertMosaic

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style.
diag.maybe.null

Returns a value for the diagonal of NA and NULL arguments.
NormalAndTplot

Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals.
seqplot.forecast

seqplot with confidence bands for the forecast region.
panel.isomeans

isomeans grid for MMC plots.
cp.calc

Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
combineLimits.trellisvector

Combine limits on a one-dimensional trellis object.
GSremove

Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet
ci.plot

Plot confidence and prediction intervals for simple linear regression
ancova-class

Class "ancova" Analysis of Covariance
interaction2wt

Plot all main effects and twoway interactions in a multifactor design
NTplot

Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial.
diagQQ

QQ plot of regression residuals.
HH-package

Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
arma.loop

Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
dchisq.intermediate

Intermediate f and chisq functions to simplify writing for both R and S-Plus.
gof.calculation

Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus.
normalApproxBinomial

Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals.
likert

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids.
panel.likert

Panel functions for likert that include a stackWidth argument
HHscriptnames

Find absolute pathname of a script file for the HH book in the HH package.
panel.cartesian

trellis panel function, with labeled rows and columns and without strip labels.
mmc.mean

MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design.
col.hh

Initializing Trellis Displays
ladder

Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
lm.case

case statistics for regression analysis
panel.axis.right

Right-justify right-axis tick labels.
likertColor

Selection of colors for Likert plots.
as.multicomp

Support functions in R for MMC (mean--mean multiple comparisons) plots.
bivariateNormal

Plot the bivariate normal density using wireframe for specified rho.
extra

Miscellaneous functions that I wish were in or consistent between S-Plus and R.
panel.bwplot.intermediate.hh

Panel functions for bwplot.
interaction.positioned

interaction method for positioned factors.
regr1.plot

plot x and y, with optional straight line fit and display of squared residuals
print.tsdiagplot

Print a "tsdiagplot" object.
npar.arma

Count the number of parameters in an ARIMA model specification.
hhpdf

R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode
axis.i2wt

specialized axis function for interaction2wt.
panel.interaction2wt

Plot all main effects and twoway interactions in a multifactor design
logit

Logistic and odds functions and their inverses.
useOuterStripsT2L1

Three-factor generalization of latticeExtra::useOuterStrips
anova.ancovaplot

ANOVA table for a c("ancovaplot","trellis") object.
matrix.trellis

Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work.
grid.yaxis.hh

make x- and y-axis labels
position

Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
if.R

Conditional Execution for R or S-Plus
mmcAspect

Control aspect ratio in MMC plots to maintain isomeans grid as a square.
multicomp.order

Update a multicomp object by ordering its contrasts.
plot.hov

Homogeneity of Variance Plot
panel.pairs.hh

Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
interval

Prediction and Confidence Intervals for glm Objects
ancovaplot

Analysis of Covariance Plots
AEdotplot

AE (Adverse Events) dotplot of incidence and relative risk
OddsRatio

Calculate or plot the odds ratio for a 2x2 table of counts.
tsdiagplot

Times series diagnostic plots for a structured set of ARIMA models.
datasets

Datasets for Statistical Analysis and Data Display, Heiberger and Holland
mmcplot

MMC (Mean-mean Multiple Comparisons) plots in lattice.
regr2.plot

3D plot of z against x and y, with regression plane fit and display of squared residuals.
lm.regsubsets

Evaluate lm model with highest adjusted $R^2$.
residual.plots

Residual plots for a linear model.
xysplom

scatterplot matrix with potentially different sets of variables on the rows and columns.
arima.diag.hh

Repair design error in S-Plus arima.diag
panel.dotplot.tb

Dotplot with evenly spaced tiebreakers.
export.eps

Exports a graph to an EPS file.
ae.dotplot

AE (Adverse Events) dotplot of incidence and relative risk
do.formula.trellis.xysplom

Interprets model formulas for xysplom and extended bwplots
norm.curve

plot a normal or a t-curve with both x and z axes.
legendGrob2wt

place separate keys to the left of each row of a trellis
mcalinfct

MCA multiple comparisons analysis (pairwise)
LikertPercentCountColumns

Display likert plots with percents in the first column of panels and counts in the second column of panels.
OneWayVarPlot

Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model.
push.vp.hh

push and pop a grid viewport, turn clipping off, change scale.
hovBF

Homogeneity of Variance: Brown--Forsyth method
multicomp.reverse

Force all comparisons in a "multicomp" object to have the same sign.
plot.multicomp

Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
panel.confintMMC

Confidence interval panel for MMC tiebreaker plots, or confidence interval plot.
F.curve

plot a chisquare or a F-curve.
print.latticeresids

Print a latticeresids object.
latticeresids

Subroutine used by residual.plots.lattice
strip.background0

Turn off the coloring in the trellis strip labels. Color 0 is the background color.
sufficient

Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
print.TwoTrellisColumns

Print two conformable trellis plots in adjacent columns with user control of widths.
panel.bwplot.superpose

Panel function for bwplot that displays an entire box in the colors coded by groups.
perspPlane

Helper functions for regr2.plot
panel.acf

Panel functions for tsdiagplot.
regrresidplot

Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares.
as.likert

Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data.
residual.plots.lattice

Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns.
pdiscunif

Discrete Uniform Distribution
resid.squares

plot squared residuals in inches to match the y-dimension
partial.corr

partial correlations
NormalAndTPower

Construct a power graph based on the NTplot.
strip.xysplom

strip function that is able to place the correlation or regression coefficient into the strip label.
seqplot

Time series plot.
plot.mmc.multicomp

MMC (Mean--mean Multiple Comparisons) plot.
orthog.complete

Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.
vif

Calculate the Variance Inflation Factor
emptyMainLeftAxisLeftStripBottomLegend

Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items.
intxplot

Interaction plot, with an option to print standard error bars.
tsacfplots

Coordinated time series and ACF and PCF plots.
panel.bwplott

Extension to S-Plus trellis to allow transposed plots.
hh

Resolve filenames relative to the HH directory.
panel.ci.plot

Default Panel Function for ci.plot
panel.xysplom

panel method for xysplom.
positioned-class

Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
objip

loop through all attached directories looking for pattern
mmcisomeans

Functions used by mmcplot.
rbind.trellis

Extend matrix reshaping functions to trellis objects.
mmcPruneIsomeans

MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor.