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Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

Functions in HH

Name Description
extra Miscellaneous functions that I wish were in or consistent between S-Plus and R.
hov Homogeneity of Variance
cp.calc Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
F.curve plot a chisquare or a F-curve.
glhtWithMCP.993 Retain averaging behavior that was previously available in glht.
if.R Conditional Execution for R or S-Plus
formatHex Format numbers in binary and hex and decimal format, and scan binary and hex.
diag.maybe.null Returns a value for the diagonal of NA and NULL arguments.
likertMosaic Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style.
do.formula.trellis.xysplom Interprets model formulas for xysplom and extended bwplots
NormalAndTPower Construct a power graph based on the NTplot.
dchisq.intermediate Intermediate f and chisq functions to simplify writing for both R and S-Plus.
LikertPercentCountColumns Display likert plots with percents in the first column of panels and counts in the second column of panels.
col3x2 col3x2 color dataset
grid.yaxis.hh make x- and y-axis labels
bivariateNormal Plot the bivariate normal density using wireframe for specified rho.
AEdotplot.data.frame AE (Adverse Events) dotplot of incidence and relative risk, support functions
HHscriptnames Find absolute pathname of a script file for the HH book in the HH package.
col.hh Initializing Trellis Displays
panel.cartesian trellis panel function, with labeled rows and columns and without strip labels.
GSremove Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet
hh Resolve filenames relative to the HH directory.
gof.calculation Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus.
HH.regsubsets Display tabular results for Best Subsets Regression.
plot.mmc.multicomp MMC (Mean--mean Multiple Comparisons) plot.
lm.regsubsets Evaluate lm model with highest adjusted $R^2$.
anova.ancovaplot ANOVA table for a c("ancovaplot","trellis") object.
legendGrob2wt place separate keys to the left of each row of a trellis
intxplot Interaction plot, with an option to print standard error bars.
anovaMean ANOVA table from the group sample sizes, means, and standard deviations.
lmatPairwise lmatPairwise
axis.i2wt specialized axis function for interaction2wt.
panel.dotplot.tb Dotplot with evenly spaced tiebreakers.
arima.diag.hh Repair design error in S-Plus arima.diag
combineLimits.trellisvector Combine limits on a one-dimensional trellis object.
plot.hov Homogeneity of Variance Plot
aovSufficient Analysis of variance from sufficient statistics for groups.
interval Prediction and Confidence Intervals for glm Objects
OddsRatio Calculate or plot the odds ratio for a 2x2 table of counts.
ae.dotplot AE (Adverse Events) dotplot of incidence and relative risk
NormalAndTplot Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals.
npar.arma Count the number of parameters in an ARIMA model specification.
ResizeEtc.likertPlot Display multiple independent trellis objects, representing likert plots, on the same coordinated scale.
panel.bwplot.superpose Panel function for bwplot that displays an entire box in the colors coded by groups.
ResizeEtc Display multiple independent trellis objects on the same coordinated scale.
useOuterStripsT2L1 Three-factor generalization of latticeExtra::useOuterStrips
ladder Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
interaction.positioned interaction method for positioned factors.
as.matrix.listOfNamedMatrices Convert a list of matrices to a single matrix
sufficient Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
push.vp.hh push and pop a grid viewport, turn clipping off, change scale.
Discrete4 Discrete with four levels color dataset.
latticeresids Subroutine used by residual.plots.lattice
multicomp.reverse Force all comparisons in a "multicomp" object to have the same sign.
ci.plot Plot confidence and prediction intervals for simple linear regression
residual.plots Residual plots for a linear model.
rbind.trellis Extend matrix reshaping functions to trellis objects.
datasets Datasets for Statistical Analysis and Data Display, Heiberger and Holland
panel.acf Panel functions for tsdiagplot.
panel.confintMMC Confidence interval panel for MMC tiebreaker plots, or confidence interval plot.
matrix.trellis Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work.
interaction2wt Plot all main effects and twoway interactions in a multifactor design
regrresidplot Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares.
logit Logistic and odds functions and their inverses.
emptyMainLeftAxisLeftStripBottomLegend Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items.
print.tsdiagplot Print a "tsdiagplot" object.
panel.bwplot.intermediate.hh Panel functions for bwplot.
lm.case case statistics for regression analysis
AEdotplot AE (Adverse Events) dotplot of incidence and relative risk
ancova Compute and plot oneway analysis of covariance
arma.loop Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
print.latticeresids Print a latticeresids object.
diagplot5new Transpose of ECDF for centered fitted values and residuals from a linear model.
lmatRows Find the row numbers in the lmat corresponding to the focus factor.
panel.pairs.hh Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
position Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
hovBF Homogeneity of Variance: Brown--Forsyth method
partial.corr partial correlations
mmc MMC (Mean--mean Multiple Comparisons) plots.
pdiscunif Discrete Uniform Distribution
defunct Defunct Functions in Package 'HH'
showHex Show numbers in binary and hex and decimal format
regr1.plot plot x and y, with optional straight line fit and display of squared residuals
mmcisomeans Functions used by mmcplot.
print.NormalAndTplot Print method for Normal and t plots from NTplot.
cplx Generate a sequence spanning the xlim of a lattice window.
print.TwoTrellisColumns Print two conformable trellis plots in adjacent columns with user control of widths.
X.residuals Residuals from the regression of each column of a data.frame against all the other columns.
tsdiagplot Times series diagnostic plots for a structured set of ARIMA models.
panel.likert Panel functions for likert that include a stackWidth argument
strip.background0 Turn off the coloring in the trellis strip labels. Color 0 is the background color.
mmc.mean MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design.
residVSfitted Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat
seqplot.forecast seqplot with confidence bands for the forecast region.
ancova-class Class "ancova" Analysis of Covariance
HH-package Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
tsacfplots Coordinated time series and ACF and PCF plots.
mcalinfct MCA multiple comparisons analysis (pairwise)
perspPlane Helper functions for regr2.plot
xysplom scatterplot matrix with potentially different sets of variables on the rows and columns.
panel.xysplom panel method for xysplom.
as.multicomp Support functions in R for MMC (mean--mean multiple comparisons) plots.
NTplot Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial.
resid.squares plot squared residuals in inches to match the y-dimension
likertColor Selection of colors for Likert plots.
normalApproxBinomial Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals.
ancovaplot Analysis of Covariance Plots
residual.plots.lattice Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns.
summary.arma.loop summary and print and subscript methods for tsdiagplot and related objects.
hhpdf R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex
as.likert Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data.
mmcplot MMC (Mean-mean Multiple Comparisons) plots in lattice.
export.eps Exports a graph to an EPS file.
likert Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids.
multicomp.order Update a multicomp object by ordering its contrasts.
panel.ci.plot Default Panel Function for ci.plot
objip loop through all attached directories looking for pattern
panel.interaction2wt Plot all main effects and twoway interactions in a multifactor design
lmplot Four types of residual plots for linear models.
pyramidLikert Print a Likert plot as a Population Triangle
mmcAspect Control aspect ratio in MMC plots to maintain isomeans grid as a square.
norm.curve plot a normal or a t-curve with both x and z axes.
panel.isomeans isomeans grid for MMC plots.
orthog.complete Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.
regr2.plot 3D plot of z against x and y, with regression plane fit and display of squared residuals.
as.vector.trellis Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object.
plot.multicomp Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
seqplot Time series plot.
diagQQ QQ plot of regression residuals.
mmcPruneIsomeans MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor.
strip.xysplom strip function that is able to place the correlation or regression coefficient into the strip label.
panel.axis.right Right-justify right-axis tick labels.
panel.bwplott Extension to S-Plus trellis to allow transposed plots.
positioned-class Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
vif Calculate the Variance Inflation Factor
OneWayVarPlot Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model.
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Type Package
Date 2015-08-23
License GPL (>= 2)
NeedsCompilation no
Packaged 2015-08-23 17:01:13 UTC; rmh
Repository CRAN
Date/Publication 2015-08-23 23:39:59

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