# HH v3.1-21

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## Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

## Functions in HH

Name | Description | |

extra | Miscellaneous functions that I wish were in or consistent between S-Plus and R. | |

hov | Homogeneity of Variance | |

cp.calc | Rearranges and improves the legibility of the output from the stepwise function in S-Plus. | |

F.curve | plot a chisquare or a F-curve. | |

glhtWithMCP.993 | Retain averaging behavior that was previously available in glht. | |

if.R | Conditional Execution for R or S-Plus | |

formatHex | Format numbers in binary and hex and decimal format, and scan binary and hex. | |

diag.maybe.null | Returns a value for the diagonal of NA and NULL arguments. | |

likertMosaic | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style. | |

do.formula.trellis.xysplom | Interprets model formulas for xysplom and extended bwplots | |

NormalAndTPower | Construct a power graph based on the NTplot. | |

dchisq.intermediate | Intermediate f and chisq functions to simplify writing for both R and S-Plus. | |

LikertPercentCountColumns | Display likert plots with percents in the first column of panels and counts in the second column of panels. | |

col3x2 | col3x2 color dataset | |

grid.yaxis.hh | make x- and y-axis labels | |

bivariateNormal | Plot the bivariate normal density using wireframe for specified rho. | |

AEdotplot.data.frame | AE (Adverse Events) dotplot of incidence and relative risk, support functions | |

HHscriptnames | Find absolute pathname of a script file for the HH book in the HH package. | |

col.hh | Initializing Trellis Displays | |

panel.cartesian | trellis panel function, with labeled rows and columns and without strip labels. | |

GSremove | Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet | |

hh | Resolve filenames relative to the HH directory. | |

gof.calculation | Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus. | |

HH.regsubsets | Display tabular results for Best Subsets Regression. | |

plot.mmc.multicomp | MMC (Mean--mean Multiple Comparisons) plot. | |

lm.regsubsets | Evaluate lm model with highest adjusted $R^2$. | |

anova.ancovaplot | ANOVA table for a c("ancovaplot","trellis") object. | |

legendGrob2wt | place separate keys to the left of each row of a trellis | |

intxplot | Interaction plot, with an option to print standard error bars. | |

anovaMean | ANOVA table from the group sample sizes, means, and standard deviations. | |

lmatPairwise | lmatPairwise | |

axis.i2wt | specialized axis function for interaction2wt. | |

panel.dotplot.tb | Dotplot with evenly spaced tiebreakers. | |

arima.diag.hh | Repair design error in S-Plus arima.diag | |

combineLimits.trellisvector | Combine limits on a one-dimensional trellis object. | |

plot.hov | Homogeneity of Variance Plot | |

aovSufficient | Analysis of variance from sufficient statistics for groups. | |

interval | Prediction and Confidence Intervals for glm Objects | |

OddsRatio | Calculate or plot the odds ratio for a 2x2 table of counts. | |

ae.dotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

NormalAndTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals. | |

npar.arma | Count the number of parameters in an ARIMA model specification. | |

ResizeEtc.likertPlot | Display multiple independent trellis objects, representing likert plots, on the same coordinated scale. | |

panel.bwplot.superpose | Panel function for bwplot that displays an entire box in the colors coded by groups. | |

ResizeEtc | Display multiple independent trellis objects on the same coordinated scale. | |

useOuterStripsT2L1 | Three-factor generalization of latticeExtra::useOuterStrips | |

ladder | Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x. | |

interaction.positioned | interaction method for positioned factors. | |

as.matrix.listOfNamedMatrices | Convert a list of matrices to a single matrix | |

sufficient | Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors. | |

push.vp.hh | push and pop a grid viewport, turn clipping off, change scale. | |

Discrete4 | Discrete with four levels color dataset. | |

latticeresids | Subroutine used by residual.plots.lattice | |

multicomp.reverse | Force all comparisons in a "multicomp" object to have the same sign. | |

ci.plot | Plot confidence and prediction intervals for simple linear regression | |

residual.plots | Residual plots for a linear model. | |

rbind.trellis | Extend matrix reshaping functions to trellis objects. | |

datasets | Datasets for Statistical Analysis and Data Display, Heiberger and Holland | |

panel.acf | Panel functions for tsdiagplot. | |

panel.confintMMC | Confidence interval panel for MMC tiebreaker plots, or confidence interval plot. | |

matrix.trellis | Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work. | |

interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

regrresidplot | Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares. | |

logit | Logistic and odds functions and their inverses. | |

emptyMainLeftAxisLeftStripBottomLegend | Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items. | |

print.tsdiagplot | Print a "tsdiagplot" object. | |

panel.bwplot.intermediate.hh | Panel functions for bwplot. | |

lm.case | case statistics for regression analysis | |

AEdotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

ancova | Compute and plot oneway analysis of covariance | |

arma.loop | Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs. | |

print.latticeresids | Print a latticeresids object. | |

diagplot5new | Transpose of ECDF for centered fitted values and residuals from a linear model. | |

lmatRows | Find the row numbers in the lmat corresponding to the focus factor. | |

panel.pairs.hh | Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments. | |

position | Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined. | |

hovBF | Homogeneity of Variance: Brown--Forsyth method | |

partial.corr | partial correlations | |

mmc | MMC (Mean--mean Multiple Comparisons) plots. | |

pdiscunif | Discrete Uniform Distribution | |

defunct | Defunct Functions in Package 'HH' | |

showHex | Show numbers in binary and hex and decimal format | |

regr1.plot | plot x and y, with optional straight line fit and display of squared residuals | |

mmcisomeans | Functions used by mmcplot. | |

print.NormalAndTplot | Print method for Normal and t plots from NTplot. | |

cplx | Generate a sequence spanning the xlim of a lattice window. | |

print.TwoTrellisColumns | Print two conformable trellis plots in adjacent columns with user control of widths. | |

X.residuals | Residuals from the regression of each column of a data.frame against all the other columns. | |

tsdiagplot | Times series diagnostic plots for a structured set of ARIMA models. | |

panel.likert | Panel functions for likert that include a stackWidth argument | |

strip.background0 | Turn off the coloring in the trellis strip labels. Color 0 is the background color. | |

mmc.mean | MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design. | |

residVSfitted | Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat | |

seqplot.forecast | seqplot with confidence bands for the forecast region. | |

ancova-class | Class "ancova" Analysis of Covariance | |

HH-package | Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland | |

tsacfplots | Coordinated time series and ACF and PCF plots. | |

mcalinfct | MCA multiple comparisons analysis (pairwise) | |

perspPlane | Helper functions for regr2.plot | |

xysplom | scatterplot matrix with potentially different sets of variables on the rows and columns. | |

panel.xysplom | panel method for xysplom. | |

as.multicomp | Support functions in R for MMC (mean--mean multiple comparisons) plots. | |

NTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial. | |

resid.squares | plot squared residuals in inches to match the y-dimension | |

likertColor | Selection of colors for Likert plots. | |

normalApproxBinomial | Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals. | |

ancovaplot | Analysis of Covariance Plots | |

residual.plots.lattice | Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns. | |

summary.arma.loop | summary and print and subscript methods for tsdiagplot and related objects. | |

hhpdf | R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex | |

as.likert | Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data. | |

mmcplot | MMC (Mean-mean Multiple Comparisons) plots in lattice. | |

export.eps | Exports a graph to an EPS file. | |

likert | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids. | |

multicomp.order | Update a multicomp object by ordering its contrasts. | |

panel.ci.plot | Default Panel Function for ci.plot | |

objip | loop through all attached directories looking for pattern | |

panel.interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

lmplot | Four types of residual plots for linear models. | |

pyramidLikert | Print a Likert plot as a Population Triangle | |

mmcAspect | Control aspect ratio in MMC plots to maintain isomeans grid as a square. | |

norm.curve | plot a normal or a t-curve with both x and z axes. | |

panel.isomeans | isomeans grid for MMC plots. | |

orthog.complete | Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns. | |

regr2.plot | 3D plot of z against x and y, with regression plane fit and display of squared residuals. | |

as.vector.trellis | Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object. | |

plot.multicomp | Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons. | |

seqplot | Time series plot. | |

diagQQ | QQ plot of regression residuals. | |

mmcPruneIsomeans | MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor. | |

strip.xysplom | strip function that is able to place the correlation or regression coefficient into the strip label. | |

panel.axis.right | Right-justify right-axis tick labels. | |

panel.bwplott | Extension to S-Plus trellis to allow transposed plots. | |

positioned-class | Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor. | |

vif | Calculate the Variance Inflation Factor | |

OneWayVarPlot | Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model. | |

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## Last month downloads

## Details

Type | Package |

Date | 2015-08-23 |

License | GPL (>= 2) |

NeedsCompilation | no |

Packaged | 2015-08-23 17:01:13 UTC; rmh |

Repository | CRAN |

Date/Publication | 2015-08-23 23:39:59 |

imports | abind , colorspace , grDevices , Hmisc , leaps , RColorBrewer , reshape2 , Rmpfr , shiny , vcd |

depends | base (>= 3.0.2) , graphics , grid , gridExtra , lattice , latticeExtra , multcomp , R (>= 3.0.2) , stats |

suggests | car , methods , mvtnorm , Rcmdr , RcmdrPlugin , RcmdrPlugin.HH , TeachingDemos |

Contributors | Richard Heiberger |

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