# HH v3.1-23

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## Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

## Functions in HH

Name | Description | |

HH.regsubsets | Display tabular results for Best Subsets Regression. | |

defunct | Defunct Functions in Package 'HH' | |

as.multicomp | Support functions in R for MMC (mean--mean multiple comparisons) plots. | |

LikertPercentCountColumns | Display likert plots with percents in the first column of panels and counts in the second column of panels. | |

glhtWithMCP.993 | Retain averaging behavior that was previously available in glht. | |

anova.ancovaplot | ANOVA table for a c("ancovaplot","trellis") object. | |

interval | Prediction and Confidence Intervals for glm Objects | |

aovSufficient | Analysis of variance from sufficient statistics for groups. | |

interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

pdiscunif | Discrete Uniform Distribution | |

bivariateNormal | Plot the bivariate normal density using wireframe for specified rho. | |

do.formula.trellis.xysplom | Interprets model formulas for xysplom and extended bwplots | |

gof.calculation | Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus. | |

grid.yaxis.hh | make x- and y-axis labels | |

ci.plot | Plot confidence and prediction intervals for simple linear regression | |

AEdotplot.data.frame | AE (Adverse Events) dotplot of incidence and relative risk, support functions | |

panel.isomeans | isomeans grid for MMC plots. | |

ae.dotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

col.hh | Initializing Trellis Displays | |

ResizeEtc.likertPlot | Display multiple independent trellis objects, representing likert plots, on the same coordinated scale. | |

panel.xysplom | panel method for xysplom. | |

mmcAspect | Control aspect ratio in MMC plots to maintain isomeans grid as a square. | |

OneWayVarPlot | Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model. | |

X.residuals | Residuals from the regression of each column of a data.frame against all the other columns. | |

print.latticeresids | Print a latticeresids object. | |

ancova-class | Class "ancova" Analysis of Covariance | |

GSremove | Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet | |

hhpdf | R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex | |

as.likert | Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data. | |

formatHex | Format numbers in binary and hex and decimal format, and scan binary and hex. | |

diagplot5new | Transpose of ECDF for centered fitted values and residuals from a linear model. | |

export.eps | Exports a graph to an EPS file. | |

cp.calc | Rearranges and improves the legibility of the output from the stepwise function in S-Plus. | |

print.TwoTrellisColumns | Print two conformable trellis plots in adjacent columns with user control of widths. | |

mmcPruneIsomeans | MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor. | |

ancovaplot | Analysis of Covariance Plots | |

axis.i2wt | specialized axis function for interaction2wt. | |

hh | Resolve filenames relative to the HH directory. | |

emptyMainLeftAxisLeftStripBottomLegend | Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items. | |

ladder | Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x. | |

hovBF | Homogeneity of Variance: Brown--Forsyth method | |

latticeresids | Subroutine used by residual.plots.lattice | |

arma.loop | Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs. | |

as.matrix.listOfNamedMatrices | Convert a list of matrices to a single matrix | |

cplx | Generate a sequence spanning the xlim of a lattice window. | |

likertColor | Selection of colors for Likert plots. | |

datasets | Datasets for Statistical Analysis and Data Display, Heiberger and Holland | |

extra | Miscellaneous functions that I wish were in or consistent between S-Plus and R. | |

HH-package | Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland | |

logit | Logistic and odds functions and their inverses. | |

positioned-class | Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor. | |

F.curve | plot a chisquare or a F-curve. | |

likertMosaic | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style. | |

vif | Calculate the Variance Inflation Factor | |

ResizeEtc | Display multiple independent trellis objects on the same coordinated scale. | |

AEdotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

npar.arma | Count the number of parameters in an ARIMA model specification. | |

hov | Homogeneity of Variance | |

lmatPairwise | lmatPairwise | |

position | Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined. | |

mmc | MMC (Mean--mean Multiple Comparisons) plots. | |

seqplot | Time series plot. | |

diagQQ | QQ plot of regression residuals. | |

intxplot | Interaction plot, with an option to print standard error bars. | |

interaction.positioned | interaction method for positioned factors. | |

matrix.trellis | Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work. | |

col3x2 | col3x2 color dataset | |

panel.likert | Panel functions for likert that include a stackWidth argument | |

xysplom | scatterplot matrix with potentially different sets of variables on the rows and columns. | |

normalApproxBinomial | Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals. | |

if.R | Conditional Execution for R or S-Plus | |

showHex | Show numbers in binary and hex and decimal format | |

summary.arma.loop | summary and print and subscript methods for tsdiagplot and related objects. | |

pyramidLikert | Print a Likert plot as a Population Triangle | |

panel.axis.right | Right-justify right-axis tick labels. | |

plot.multicomp | Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons. | |

lmatRows | Find the row numbers in the lmat corresponding to the focus factor. | |

panel.interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

useOuterStripsT2L1 | Three-factor generalization of latticeExtra::useOuterStrips | |

resid.squares | plot squared residuals in inches to match the y-dimension | |

panel.bwplott | Extension to S-Plus trellis to allow transposed plots. | |

print.NormalAndTplot | Print method for Normal and t plots from NTplot. | |

residVSfitted | Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat | |

diag.maybe.null | Returns a value for the diagonal of NA and NULL arguments. | |

push.vp.hh | push and pop a grid viewport, turn clipping off, change scale. | |

residual.plots | Residual plots for a linear model. | |

lm.regsubsets | Evaluate lm model with highest adjusted $R^2$. | |

OddsRatio | Calculate or plot the odds ratio for a 2x2 table of counts. | |

lmplot | Four types of residual plots for linear models. | |

anovaMean | ANOVA table from the group sample sizes, means, and standard deviations. | |

panel.confintMMC | Confidence interval panel for MMC tiebreaker plots, or confidence interval plot. | |

Discrete4 | Discrete with four levels color dataset. | |

regrresidplot | Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares. | |

tsacfplots | Coordinated time series and ACF and PCF plots. | |

panel.pairs.hh | Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments. | |

multicomp.order | Update a multicomp object by ordering its contrasts. | |

HHscriptnames | Find absolute pathname of a script file for the HH book in the HH package. | |

combineLimits.trellisvector | Combine limits on a one-dimensional trellis object. | |

multicomp.reverse | Force all comparisons in a "multicomp" object to have the same sign. | |

mcalinfct | MCA multiple comparisons analysis (pairwise) | |

legendGrob2wt | place separate keys to the left of each row of a trellis | |

panel.ci.plot | Default Panel Function for ci.plot | |

arima.diag.hh | Repair design error in S-Plus arima.diag | |

sufficient | Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors. | |

strip.xysplom | strip function that is able to place the correlation or regression coefficient into the strip label. | |

likert | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids. | |

perspPlane | Helper functions for regr2.plot | |

regr2.plot | 3D plot of z against x and y, with regression plane fit and display of squared residuals. | |

dchisq.intermediate | Intermediate f and chisq functions to simplify writing for both R and S-Plus. | |

panel.bwplot.superpose | Panel function for bwplot that displays an entire box in the colors coded by groups. | |

panel.cartesian | trellis panel function, with labeled rows and columns and without strip labels. | |

panel.bwplot.intermediate.hh | Panel functions for bwplot. | |

tsdiagplot | Times series diagnostic plots for a structured set of ARIMA models. | |

plot.hov | Homogeneity of Variance Plot | |

rbind.trellis | Extend matrix reshaping functions to trellis objects. | |

residual.plots.lattice | Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns. | |

mmc.mean | MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design. | |

plot.mmc.multicomp | MMC (Mean--mean Multiple Comparisons) plot. | |

seqplot.forecast | seqplot with confidence bands for the forecast region. | |

print.tsdiagplot | Print a "tsdiagplot" object. | |

NormalAndTPower | Construct a power graph based on the NTplot. | |

panel.acf | Panel functions for tsdiagplot. | |

mmcisomeans | Functions used by mmcplot. | |

partial.corr | partial correlations | |

norm.curve | plot a normal or a t-curve with both x and z axes. | |

orthog.complete | Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns. | |

strip.background0 | Turn off the coloring in the trellis strip labels. Color 0 is the background color. | |

NTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial. | |

panel.dotplot.tb | Dotplot with evenly spaced tiebreakers. | |

NormalAndTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals. | |

as.vector.trellis | Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object. | |

ancova | Compute and plot oneway analysis of covariance | |

lm.case | case statistics for regression analysis | |

mmcplot | MMC (Mean-mean Multiple Comparisons) plots in lattice. | |

objip | loop through all attached directories looking for pattern | |

regr1.plot | plot x and y, with optional straight line fit and display of squared residuals | |

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## Last month downloads

## Details

Type | Package |

Date | 2015-11-06 |

License | GPL (>= 2) |

NeedsCompilation | no |

Packaged | 2015-11-08 21:46:06 UTC; rmh |

Repository | CRAN |

Date/Publication | 2015-11-09 14:55:32 |

imports | abind , colorspace , grDevices , Hmisc , leaps , RColorBrewer , reshape2 , Rmpfr , shiny , vcd |

depends | base (>= 3.0.2) , graphics , grid , gridExtra , lattice , latticeExtra , multcomp , R (>= 3.0.2) , stats |

suggests | car , methods , mvtnorm , Rcmdr , RcmdrPlugin , RcmdrPlugin.HH , TeachingDemos |

Contributors | Richard Heiberger |

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