# HH v3.1-24

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## Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

## Functions in HH

Name | Description | |

combineLimits.trellisvector | Combine limits on a one-dimensional trellis object. | |

X.residuals | Residuals from the regression of each column of a data.frame against all the other columns. | |

plot.multicomp | Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons. | |

ancova | Compute and plot oneway analysis of covariance | |

diagQQ | QQ plot of regression residuals. | |

lmatPairwise | lmatPairwise | |

lmatRows | Find the row numbers in the lmat corresponding to the focus factor. | |

mmcPruneIsomeans | MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor. | |

panel.isomeans | isomeans grid for MMC plots. | |

cp.calc | Rearranges and improves the legibility of the output from the stepwise function in S-Plus. | |

likertMosaic | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style. | |

NormalAndTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals. | |

cplx | Generate a sequence spanning the xlim of a lattice window. | |

strip.xysplom | strip function that is able to place the correlation or regression coefficient into the strip label. | |

F.curve | plot a chisquare or a F-curve. | |

hh | Resolve filenames relative to the HH directory. | |

grid.yaxis.hh | make x- and y-axis labels | |

panel.bwplot.superpose | Panel function for bwplot that displays an entire box in the colors coded by groups. | |

mcalinfct | MCA multiple comparisons analysis (pairwise) | |

ResizeEtc | Display multiple independent trellis objects on the same coordinated scale. | |

ancova-class | Class "ancova" Analysis of Covariance | |

rbind.trellis | Extend matrix reshaping functions to trellis objects. | |

interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

mmc | MMC (Mean--mean Multiple Comparisons) plots. | |

mmcAspect | Control aspect ratio in MMC plots to maintain isomeans grid as a square. | |

print.latticeresids | Print a latticeresids object. | |

seqplot | Time series plot. | |

regr1.plot | plot x and y, with optional straight line fit and display of squared residuals | |

resid.squares | plot squared residuals in inches to match the y-dimension | |

print.NormalAndTplot | Print method for Normal and t plots from NTplot. | |

npar.arma | Count the number of parameters in an ARIMA model specification. | |

lm.case | case statistics for regression analysis | |

multicomp.reverse | Force all comparisons in a "multicomp" object to have the same sign. | |

aovSufficient | Analysis of variance from sufficient statistics for groups. | |

plot.hov | Homogeneity of Variance Plot | |

ladder | Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x. | |

push.vp.hh | push and pop a grid viewport, turn clipping off, change scale. | |

AEdotplot.data.frame | AE (Adverse Events) dotplot of incidence and relative risk, support functions | |

as.likert | Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data. | |

panel.interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

panel.bwplot.intermediate.hh | Panel functions for bwplot. | |

tsacfplots | Coordinated time series and ACF and PCF plots. | |

NormalAndTPower | Construct a power graph based on the NTplot. | |

likertColor | Selection of colors for Likert plots. | |

norm.curve | plot a normal or a t-curve with both x and z axes. | |

plot.mmc.multicomp | MMC (Mean--mean Multiple Comparisons) plot. | |

OneWayVarPlot | Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model. | |

useOuterStripsT2L1 | Three-factor generalization of latticeExtra::useOuterStrips | |

HHscriptnames | Find absolute pathname of a script file for the HH book in the HH package. | |

defunct | Defunct Functions in Package 'HH' | |

panel.likert | Panel functions for likert that include a stackWidth argument | |

diagplot5new | Transpose of ECDF for centered fitted values and residuals from a linear model. | |

tsdiagplot | Times series diagnostic plots for a structured set of ARIMA models. | |

xysplom | scatterplot matrix with potentially different sets of variables on the rows and columns. | |

print.TwoTrellisColumns | Print two conformable trellis plots in adjacent columns with user control of widths. | |

as.vector.trellis | Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object. | |

panel.dotplot.tb | Dotplot with evenly spaced tiebreakers. | |

lm.regsubsets | Evaluate lm model with highest adjusted $R^2$. | |

as.matrix.listOfNamedMatrices | Convert a list of matrices to a single matrix | |

position | Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined. | |

pdiscunif | Discrete Uniform Distribution | |

export.eps | Exports a graph to an EPS file. | |

pyramidLikert | Print a Likert plot as a Population Triangle | |

ae.dotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

ci.plot | Plot confidence and prediction intervals for simple linear regression | |

panel.axis.right | Right-justify right-axis tick labels. | |

interval | Prediction and Confidence Intervals for glm Objects | |

extra | Miscellaneous functions that I wish were in or consistent between S-Plus and R. | |

GSremove | Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet | |

panel.xysplom | panel method for xysplom. | |

residual.plots | Residual plots for a linear model. | |

legendGrob2wt | place separate keys to the left of each row of a trellis | |

partial.corr | partial correlations | |

NTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial. | |

col3x2 | col3x2 color dataset | |

ResizeEtc.likertPlot | Display multiple independent trellis objects, representing likert plots, on the same coordinated scale. | |

glhtWithMCP.993 | Retain averaging behavior that was previously available in glht. | |

hovBF | Homogeneity of Variance: Brown--Forsyth method | |

ancovaplot | Analysis of Covariance Plots | |

HH-package | Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland | |

LikertPercentCountColumns | Display likert plots with percents in the first column of panels and counts in the second column of panels. | |

arma.loop | Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs. | |

emptyMainLeftAxisLeftStripBottomLegend | Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items. | |

regr2.plot | 3D plot of z against x and y, with regression plane fit and display of squared residuals. | |

panel.cartesian | trellis panel function, with labeled rows and columns and without strip labels. | |

interaction.positioned | interaction method for positioned factors. | |

dchisq.intermediate | Intermediate f and chisq functions to simplify writing for both R and S-Plus. | |

datasets | Datasets for Statistical Analysis and Data Display, Heiberger and Holland | |

strip.background0 | Turn off the coloring in the trellis strip labels. Color 0 is the background color. | |

OddsRatio | Calculate or plot the odds ratio for a 2x2 table of counts. | |

residVSfitted | Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat | |

AEdotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

diag.maybe.null | Returns a value for the diagonal of NA and NULL arguments. | |

logit | Logistic and odds functions and their inverses. | |

mmc.mean | MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design. | |

residual.plots.lattice | Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns. | |

axis.i2wt | specialized axis function for interaction2wt. | |

latticeresids | Subroutine used by residual.plots.lattice | |

panel.bwplott | Extension to S-Plus trellis to allow transposed plots. | |

panel.pairs.hh | Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments. | |

mmcisomeans | Functions used by mmcplot. | |

seqplot.forecast | seqplot with confidence bands for the forecast region. | |

anova.ancovaplot | ANOVA table for a c("ancovaplot","trellis") object. | |

regrresidplot | Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares. | |

summary.arma.loop | summary and print and subscript methods for tsdiagplot and related objects. | |

print.tsdiagplot | Print a "tsdiagplot" object. | |

hhpdf | R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex | |

hov | Homogeneity of Variance | |

perspPlane | Helper functions for regr2.plot | |

orthog.complete | Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns. | |

objip | loop through all attached directories looking for pattern | |

do.formula.trellis.xysplom | Interprets model formulas for xysplom and extended bwplots | |

anovaMean | ANOVA table from the group sample sizes, means, and standard deviations. | |

multicomp.order | Update a multicomp object by ordering its contrasts. | |

likert | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids. | |

col.hh | Initializing Trellis Displays | |

panel.acf | Panel functions for tsdiagplot. | |

positioned-class | Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor. | |

sufficient | Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors. | |

as.multicomp | Support functions in R for MMC (mean--mean multiple comparisons) plots. | |

bivariateNormal | Plot the bivariate normal density using wireframe for specified rho. | |

panel.ci.plot | Default Panel Function for ci.plot | |

mmcplot | MMC (Mean-mean Multiple Comparisons) plots in lattice. | |

vif | Calculate the Variance Inflation Factor | |

matrix.trellis | Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work. | |

Discrete4 | Discrete with four levels color dataset. | |

arima.diag.hh | Repair design error in S-Plus arima.diag | |

intxplot | Interaction plot, with an option to print standard error bars. | |

panel.confintMMC | Confidence interval panel for MMC tiebreaker plots, or confidence interval plot. | |

HH.regsubsets | Display tabular results for Best Subsets Regression. | |

lmplot | Four types of residual plots for linear models. | |

normalApproxBinomial | Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals. | |

if.R | Conditional Execution for R or S-Plus | |

gof.calculation | Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus. | |

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## Last month downloads

## Details

Type | Package |

Date | 2015-12-15 |

License | GPL (>= 2) |

NeedsCompilation | no |

Packaged | 2015-12-15 15:40:48 UTC; rmh |

Repository | CRAN |

Date/Publication | 2015-12-15 20:48:23 |

imports | abind , colorspace , grDevices , Hmisc , leaps , RColorBrewer , reshape2 , Rmpfr (>= 0.6.0) , shiny , vcd |

depends | base (>= 3.0.2) , graphics , grid , gridExtra , lattice , latticeExtra , multcomp , R (>= 3.0.2) , stats |

suggests | car , methods , mvtnorm , Rcmdr , RcmdrPlugin , RcmdrPlugin.HH , TeachingDemos |

Contributors | Richard Heiberger |

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