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Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

Functions in HH

Name Description
combineLimits.trellisvector Combine limits on a one-dimensional trellis object.
X.residuals Residuals from the regression of each column of a data.frame against all the other columns.
plot.multicomp Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
ancova Compute and plot oneway analysis of covariance
diagQQ QQ plot of regression residuals.
lmatPairwise lmatPairwise
lmatRows Find the row numbers in the lmat corresponding to the focus factor.
mmcPruneIsomeans MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor.
panel.isomeans isomeans grid for MMC plots.
cp.calc Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
likertMosaic Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style.
NormalAndTplot Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals.
cplx Generate a sequence spanning the xlim of a lattice window.
strip.xysplom strip function that is able to place the correlation or regression coefficient into the strip label.
F.curve plot a chisquare or a F-curve.
hh Resolve filenames relative to the HH directory.
grid.yaxis.hh make x- and y-axis labels
panel.bwplot.superpose Panel function for bwplot that displays an entire box in the colors coded by groups.
mcalinfct MCA multiple comparisons analysis (pairwise)
ResizeEtc Display multiple independent trellis objects on the same coordinated scale.
ancova-class Class "ancova" Analysis of Covariance
rbind.trellis Extend matrix reshaping functions to trellis objects.
interaction2wt Plot all main effects and twoway interactions in a multifactor design
mmc MMC (Mean--mean Multiple Comparisons) plots.
mmcAspect Control aspect ratio in MMC plots to maintain isomeans grid as a square.
print.latticeresids Print a latticeresids object.
seqplot Time series plot.
regr1.plot plot x and y, with optional straight line fit and display of squared residuals
resid.squares plot squared residuals in inches to match the y-dimension
print.NormalAndTplot Print method for Normal and t plots from NTplot.
npar.arma Count the number of parameters in an ARIMA model specification.
lm.case case statistics for regression analysis
multicomp.reverse Force all comparisons in a "multicomp" object to have the same sign.
aovSufficient Analysis of variance from sufficient statistics for groups.
plot.hov Homogeneity of Variance Plot
ladder Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
push.vp.hh push and pop a grid viewport, turn clipping off, change scale.
AEdotplot.data.frame AE (Adverse Events) dotplot of incidence and relative risk, support functions
as.likert Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data.
panel.interaction2wt Plot all main effects and twoway interactions in a multifactor design
panel.bwplot.intermediate.hh Panel functions for bwplot.
tsacfplots Coordinated time series and ACF and PCF plots.
NormalAndTPower Construct a power graph based on the NTplot.
likertColor Selection of colors for Likert plots.
norm.curve plot a normal or a t-curve with both x and z axes.
plot.mmc.multicomp MMC (Mean--mean Multiple Comparisons) plot.
OneWayVarPlot Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model.
useOuterStripsT2L1 Three-factor generalization of latticeExtra::useOuterStrips
HHscriptnames Find absolute pathname of a script file for the HH book in the HH package.
defunct Defunct Functions in Package 'HH'
panel.likert Panel functions for likert that include a stackWidth argument
diagplot5new Transpose of ECDF for centered fitted values and residuals from a linear model.
tsdiagplot Times series diagnostic plots for a structured set of ARIMA models.
xysplom scatterplot matrix with potentially different sets of variables on the rows and columns.
print.TwoTrellisColumns Print two conformable trellis plots in adjacent columns with user control of widths.
as.vector.trellis Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object.
panel.dotplot.tb Dotplot with evenly spaced tiebreakers.
lm.regsubsets Evaluate lm model with highest adjusted $R^2$.
as.matrix.listOfNamedMatrices Convert a list of matrices to a single matrix
position Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
pdiscunif Discrete Uniform Distribution
export.eps Exports a graph to an EPS file.
pyramidLikert Print a Likert plot as a Population Triangle
ae.dotplot AE (Adverse Events) dotplot of incidence and relative risk
ci.plot Plot confidence and prediction intervals for simple linear regression
panel.axis.right Right-justify right-axis tick labels.
interval Prediction and Confidence Intervals for glm Objects
extra Miscellaneous functions that I wish were in or consistent between S-Plus and R.
GSremove Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet
panel.xysplom panel method for xysplom.
residual.plots Residual plots for a linear model.
legendGrob2wt place separate keys to the left of each row of a trellis
partial.corr partial correlations
NTplot Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial.
col3x2 col3x2 color dataset
ResizeEtc.likertPlot Display multiple independent trellis objects, representing likert plots, on the same coordinated scale.
glhtWithMCP.993 Retain averaging behavior that was previously available in glht.
hovBF Homogeneity of Variance: Brown--Forsyth method
ancovaplot Analysis of Covariance Plots
HH-package Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
LikertPercentCountColumns Display likert plots with percents in the first column of panels and counts in the second column of panels.
arma.loop Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
emptyMainLeftAxisLeftStripBottomLegend Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items.
regr2.plot 3D plot of z against x and y, with regression plane fit and display of squared residuals.
panel.cartesian trellis panel function, with labeled rows and columns and without strip labels.
interaction.positioned interaction method for positioned factors.
dchisq.intermediate Intermediate f and chisq functions to simplify writing for both R and S-Plus.
datasets Datasets for Statistical Analysis and Data Display, Heiberger and Holland
strip.background0 Turn off the coloring in the trellis strip labels. Color 0 is the background color.
OddsRatio Calculate or plot the odds ratio for a 2x2 table of counts.
residVSfitted Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat
AEdotplot AE (Adverse Events) dotplot of incidence and relative risk
diag.maybe.null Returns a value for the diagonal of NA and NULL arguments.
logit Logistic and odds functions and their inverses.
mmc.mean MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design.
residual.plots.lattice Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns.
axis.i2wt specialized axis function for interaction2wt.
latticeresids Subroutine used by residual.plots.lattice
panel.bwplott Extension to S-Plus trellis to allow transposed plots.
panel.pairs.hh Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
mmcisomeans Functions used by mmcplot.
seqplot.forecast seqplot with confidence bands for the forecast region.
anova.ancovaplot ANOVA table for a c("ancovaplot","trellis") object.
regrresidplot Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares.
summary.arma.loop summary and print and subscript methods for tsdiagplot and related objects.
print.tsdiagplot Print a "tsdiagplot" object.
hhpdf R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex
hov Homogeneity of Variance
perspPlane Helper functions for regr2.plot
orthog.complete Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.
objip loop through all attached directories looking for pattern
do.formula.trellis.xysplom Interprets model formulas for xysplom and extended bwplots
anovaMean ANOVA table from the group sample sizes, means, and standard deviations.
multicomp.order Update a multicomp object by ordering its contrasts.
likert Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids.
col.hh Initializing Trellis Displays
panel.acf Panel functions for tsdiagplot.
positioned-class Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
sufficient Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
as.multicomp Support functions in R for MMC (mean--mean multiple comparisons) plots.
bivariateNormal Plot the bivariate normal density using wireframe for specified rho.
panel.ci.plot Default Panel Function for ci.plot
mmcplot MMC (Mean-mean Multiple Comparisons) plots in lattice.
vif Calculate the Variance Inflation Factor
matrix.trellis Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work.
Discrete4 Discrete with four levels color dataset.
arima.diag.hh Repair design error in S-Plus arima.diag
intxplot Interaction plot, with an option to print standard error bars.
panel.confintMMC Confidence interval panel for MMC tiebreaker plots, or confidence interval plot.
HH.regsubsets Display tabular results for Best Subsets Regression.
lmplot Four types of residual plots for linear models.
normalApproxBinomial Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals.
if.R Conditional Execution for R or S-Plus
gof.calculation Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus.
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Type Package
Date 2015-12-15
License GPL (>= 2)
NeedsCompilation no
Packaged 2015-12-15 15:40:48 UTC; rmh
Repository CRAN
Date/Publication 2015-12-15 20:48:23

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