Learn R Programming

⚠️There's a newer version (3.1-47) of this package.Take me there.

HH (version 3.1-25)

Statistical Analysis and Data Display: Heiberger and Holland

Description

Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

Copy Link

Version

Install

install.packages('HH')

Monthly Downloads

5,991

Version

3.1-25

License

GPL (>= 2)

Maintainer

Richard Heiberger

Last Published

February 3rd, 2016

Functions in HH (3.1-25)

combineLimits.trellisvector

Combine limits on a one-dimensional trellis object.
diagplot5new

Transpose of ECDF for centered fitted values and residuals from a linear model.
anova.ancovaplot

ANOVA table for a c("ancovaplot","trellis") object.
ci.plot

Plot confidence and prediction intervals for simple linear regression
matrix.trellis

Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work.
multicomp.order

Update a multicomp object by ordering its contrasts.
as.likert

Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data.
hhpdf

R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex
if.R

Conditional Execution for R or S-Plus
mmc.mean

MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design.
tsdiagplot

Times series diagnostic plots for a structured set of ARIMA models.
orthog.complete

Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.
defunct

Defunct Functions in Package 'HH'
likertMosaic

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style.
interval

Prediction and Confidence Intervals for glm Objects
ancova

Compute and plot oneway analysis of covariance
ladder

Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
panel.cartesian

trellis panel function, with labeled rows and columns and without strip labels.
ancovaplot

Analysis of Covariance Plots
pyramidLikert

Print a Likert plot as a Population Triangle
as.vector.trellis

Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object.
X.residuals

Residuals from the regression of each column of a data.frame against all the other columns.
mmcAspect

Control aspect ratio in MMC plots to maintain isomeans grid as a square.
dchisq.intermediate

Intermediate f and chisq functions to simplify writing for both R and S-Plus.
lm.regsubsets

Evaluate lm model with highest adjusted $R^2$.
pdiscunif

Discrete Uniform Distribution
plot.hov

Homogeneity of Variance Plot
residual.plots.lattice

Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns.
emptyMainLeftAxisLeftStripBottomLegend

Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items.
HH.regsubsets

Display tabular results for Best Subsets Regression.
cp.calc

Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
likert

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids.
rbind.trellis

Extend matrix reshaping functions to trellis objects.
panel.confintMMC

Confidence interval panel for MMC tiebreaker plots, or confidence interval plot.
export.eps

Exports a graph to an EPS file.
resid.squares

plot squared residuals in inches to match the y-dimension
ae.dotplot

AE (Adverse Events) dotplot of incidence and relative risk
regrresidplot

Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares.
hov

Homogeneity of Variance
lmatRows

Find the row numbers in the lmat corresponding to the focus factor.
arma.loop

Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
HH-package

Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
as.matrix.listOfNamedMatrices

Convert a list of matrices to a single matrix
AEdotplot

AE (Adverse Events) dotplot of incidence and relative risk
diagQQ

QQ plot of regression residuals.
positioned-class

Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
hovBF

Homogeneity of Variance: Brown--Forsyth method
bivariateNormal

Plot the bivariate normal density using wireframe for specified rho.
strip.background0

Turn off the coloring in the trellis strip labels. Color 0 is the background color.
aovSufficient

Analysis of variance from sufficient statistics for groups.
print.TwoTrellisColumns

Print two conformable trellis plots in adjacent columns with user control of widths.
anovaMean

ANOVA table from the group sample sizes, means, and standard deviations.
legendGrob2wt

place separate keys to the left of each row of a trellis
axis.i2wt

specialized axis function for interaction2wt.
intxplot

Interaction plot, with an option to print standard error bars.
latticeresids

Subroutine used by residual.plots.lattice
ResizeEtc.likertPlot

Display multiple independent trellis objects, representing likert plots, on the same coordinated scale.
HHscriptnames

Find absolute pathname of a script file for the HH book in the HH package.
multicomp.reverse

Force all comparisons in a "multicomp" object to have the same sign.
panel.bwplot.intermediate.hh

Panel functions for bwplot.
ancova-class

Class "ancova" Analysis of Covariance
datasets

Datasets for Statistical Analysis and Data Display, Heiberger and Holland
logit

Logistic and odds functions and their inverses.
diag.maybe.null

Returns a value for the diagonal of NA and NULL arguments.
as.multicomp

Support functions in R for MMC (mean--mean multiple comparisons) plots.
residVSfitted

Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat
plot.multicomp

Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
grid.yaxis.hh

make x- and y-axis labels
panel.pairs.hh

Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
hh

Resolve filenames relative to the HH directory.
mmc

MMC (Mean--mean Multiple Comparisons) plots.
mmcisomeans

Functions used by mmcplot.
objip

loop through all attached directories looking for pattern
panel.ci.plot

Default Panel Function for ci.plot
GSremove

Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet
normalApproxBinomial

Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals.
npar.arma

Count the number of parameters in an ARIMA model specification.
interaction.positioned

interaction method for positioned factors.
AEdotplot.data.frame

AE (Adverse Events) dotplot of incidence and relative risk, support functions
interaction2wt

Plot all main effects and twoway interactions in a multifactor design
panel.axis.right

Right-justify right-axis tick labels.
NTplot

Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial.
lmplot

Four types of residual plots for linear models.
mmcPruneIsomeans

MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor.
OneWayVarPlot

Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model.
likertColor

Selection of colors for Likert plots.
gof.calculation

Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus.
print.NormalAndTplot

Print method for Normal and t plots from NTplot.
mmcplot

MMC (Mean-mean Multiple Comparisons) plots in lattice.
col.hh

Initializing Trellis Displays
glhtWithMCP.993

Retain averaging behavior that was previously available in glht.
norm.curve

plot a normal or a t-curve with both x and z axes.
panel.acf

Panel functions for tsdiagplot.
cplx

Generate a sequence spanning the xlim of a lattice window.
partial.corr

partial correlations
mcalinfct

MCA multiple comparisons analysis (pairwise)
arima.diag.hh

Repair design error in S-Plus arima.diag
extra

Miscellaneous functions that I wish were in or consistent between S-Plus and R.
panel.isomeans

isomeans grid for MMC plots.
panel.bwplott

Extension to S-Plus trellis to allow transposed plots.
seqplot

Time series plot.
summary.arma.loop

summary and print and subscript methods for tsdiagplot and related objects.
NormalAndTplot

Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals.
position

Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
regr1.plot

plot x and y, with optional straight line fit and display of squared residuals
lm.case

case statistics for regression analysis
useOuterStripsT2L1

Three-factor generalization of latticeExtra::useOuterStrips
panel.xysplom

panel method for xysplom.
panel.bwplot.superpose

Panel function for bwplot that displays an entire box in the colors coded by groups.
vif

Calculate the Variance Inflation Factor
regr2.plot

3D plot of z against x and y, with regression plane fit and display of squared residuals.
strip.xysplom

strip function that is able to place the correlation or regression coefficient into the strip label.
sufficient

Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
seqplot.forecast

seqplot with confidence bands for the forecast region.
perspPlane

Helper functions for regr2.plot
panel.likert

Panel functions for likert that include a stackWidth argument
do.formula.trellis.xysplom

Interprets model formulas for xysplom and extended bwplots
xysplom

scatterplot matrix with potentially different sets of variables on the rows and columns.
panel.interaction2wt

Plot all main effects and twoway interactions in a multifactor design
NormalAndTPower

Construct a power graph based on the NTplot.
print.tsdiagplot

Print a "tsdiagplot" object.
plot.mmc.multicomp

MMC (Mean--mean Multiple Comparisons) plot.
residual.plots

Residual plots for a linear model.
tsacfplots

Coordinated time series and ACF and PCF plots.
push.vp.hh

push and pop a grid viewport, turn clipping off, change scale.
Discrete4

Discrete with four levels color dataset.
ResizeEtc

Display multiple independent trellis objects on the same coordinated scale.
col3x2

col3x2 color dataset
lmatPairwise

lmatPairwise
print.latticeresids

Print a latticeresids object.
F.curve

plot a chisquare or a F-curve.
LikertPercentCountColumns

Display likert plots with percents in the first column of panels and counts in the second column of panels.
OddsRatio

Calculate or plot the odds ratio for a 2x2 table of counts.
panel.dotplot.tb

Dotplot with evenly spaced tiebreakers.