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Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

Functions in HH

Name Description
combineLimits.trellisvector Combine limits on a one-dimensional trellis object.
diagplot5new Transpose of ECDF for centered fitted values and residuals from a linear model.
anova.ancovaplot ANOVA table for a c("ancovaplot","trellis") object.
ci.plot Plot confidence and prediction intervals for simple linear regression
matrix.trellis Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work.
multicomp.order Update a multicomp object by ordering its contrasts.
as.likert Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data.
hhpdf R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex
if.R Conditional Execution for R or S-Plus
mmc.mean MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design.
tsdiagplot Times series diagnostic plots for a structured set of ARIMA models.
orthog.complete Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.
defunct Defunct Functions in Package 'HH'
likertMosaic Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style.
interval Prediction and Confidence Intervals for glm Objects
ancova Compute and plot oneway analysis of covariance
ladder Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
panel.cartesian trellis panel function, with labeled rows and columns and without strip labels.
ancovaplot Analysis of Covariance Plots
pyramidLikert Print a Likert plot as a Population Triangle
as.vector.trellis Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object.
X.residuals Residuals from the regression of each column of a data.frame against all the other columns.
mmcAspect Control aspect ratio in MMC plots to maintain isomeans grid as a square.
dchisq.intermediate Intermediate f and chisq functions to simplify writing for both R and S-Plus.
lm.regsubsets Evaluate lm model with highest adjusted $R^2$.
pdiscunif Discrete Uniform Distribution
plot.hov Homogeneity of Variance Plot
residual.plots.lattice Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns.
emptyMainLeftAxisLeftStripBottomLegend Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items.
HH.regsubsets Display tabular results for Best Subsets Regression.
cp.calc Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
likert Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids.
rbind.trellis Extend matrix reshaping functions to trellis objects.
panel.confintMMC Confidence interval panel for MMC tiebreaker plots, or confidence interval plot.
export.eps Exports a graph to an EPS file.
resid.squares plot squared residuals in inches to match the y-dimension
ae.dotplot AE (Adverse Events) dotplot of incidence and relative risk
regrresidplot Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares.
hov Homogeneity of Variance
lmatRows Find the row numbers in the lmat corresponding to the focus factor.
arma.loop Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
HH-package Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
as.matrix.listOfNamedMatrices Convert a list of matrices to a single matrix
AEdotplot AE (Adverse Events) dotplot of incidence and relative risk
diagQQ QQ plot of regression residuals.
positioned-class Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
hovBF Homogeneity of Variance: Brown--Forsyth method
bivariateNormal Plot the bivariate normal density using wireframe for specified rho.
strip.background0 Turn off the coloring in the trellis strip labels. Color 0 is the background color.
aovSufficient Analysis of variance from sufficient statistics for groups.
print.TwoTrellisColumns Print two conformable trellis plots in adjacent columns with user control of widths.
anovaMean ANOVA table from the group sample sizes, means, and standard deviations.
legendGrob2wt place separate keys to the left of each row of a trellis
axis.i2wt specialized axis function for interaction2wt.
intxplot Interaction plot, with an option to print standard error bars.
latticeresids Subroutine used by residual.plots.lattice
ResizeEtc.likertPlot Display multiple independent trellis objects, representing likert plots, on the same coordinated scale.
HHscriptnames Find absolute pathname of a script file for the HH book in the HH package.
multicomp.reverse Force all comparisons in a "multicomp" object to have the same sign.
panel.bwplot.intermediate.hh Panel functions for bwplot.
ancova-class Class "ancova" Analysis of Covariance
datasets Datasets for Statistical Analysis and Data Display, Heiberger and Holland
logit Logistic and odds functions and their inverses.
diag.maybe.null Returns a value for the diagonal of NA and NULL arguments.
as.multicomp Support functions in R for MMC (mean--mean multiple comparisons) plots.
residVSfitted Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat
plot.multicomp Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
grid.yaxis.hh make x- and y-axis labels
panel.pairs.hh Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
hh Resolve filenames relative to the HH directory.
mmc MMC (Mean--mean Multiple Comparisons) plots.
mmcisomeans Functions used by mmcplot.
objip loop through all attached directories looking for pattern
panel.ci.plot Default Panel Function for ci.plot
GSremove Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet
normalApproxBinomial Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals.
npar.arma Count the number of parameters in an ARIMA model specification.
interaction.positioned interaction method for positioned factors.
AEdotplot.data.frame AE (Adverse Events) dotplot of incidence and relative risk, support functions
interaction2wt Plot all main effects and twoway interactions in a multifactor design
panel.axis.right Right-justify right-axis tick labels.
NTplot Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial.
lmplot Four types of residual plots for linear models.
mmcPruneIsomeans MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor.
OneWayVarPlot Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model.
likertColor Selection of colors for Likert plots.
gof.calculation Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus.
print.NormalAndTplot Print method for Normal and t plots from NTplot.
mmcplot MMC (Mean-mean Multiple Comparisons) plots in lattice.
col.hh Initializing Trellis Displays
glhtWithMCP.993 Retain averaging behavior that was previously available in glht.
norm.curve plot a normal or a t-curve with both x and z axes.
panel.acf Panel functions for tsdiagplot.
cplx Generate a sequence spanning the xlim of a lattice window.
partial.corr partial correlations
mcalinfct MCA multiple comparisons analysis (pairwise)
arima.diag.hh Repair design error in S-Plus arima.diag
extra Miscellaneous functions that I wish were in or consistent between S-Plus and R.
panel.isomeans isomeans grid for MMC plots.
panel.bwplott Extension to S-Plus trellis to allow transposed plots.
seqplot Time series plot.
summary.arma.loop summary and print and subscript methods for tsdiagplot and related objects.
NormalAndTplot Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals.
position Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
regr1.plot plot x and y, with optional straight line fit and display of squared residuals
lm.case case statistics for regression analysis
useOuterStripsT2L1 Three-factor generalization of latticeExtra::useOuterStrips
panel.xysplom panel method for xysplom.
panel.bwplot.superpose Panel function for bwplot that displays an entire box in the colors coded by groups.
vif Calculate the Variance Inflation Factor
regr2.plot 3D plot of z against x and y, with regression plane fit and display of squared residuals.
strip.xysplom strip function that is able to place the correlation or regression coefficient into the strip label.
sufficient Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
seqplot.forecast seqplot with confidence bands for the forecast region.
perspPlane Helper functions for regr2.plot
panel.likert Panel functions for likert that include a stackWidth argument
do.formula.trellis.xysplom Interprets model formulas for xysplom and extended bwplots
xysplom scatterplot matrix with potentially different sets of variables on the rows and columns.
panel.interaction2wt Plot all main effects and twoway interactions in a multifactor design
NormalAndTPower Construct a power graph based on the NTplot.
print.tsdiagplot Print a "tsdiagplot" object.
plot.mmc.multicomp MMC (Mean--mean Multiple Comparisons) plot.
residual.plots Residual plots for a linear model.
tsacfplots Coordinated time series and ACF and PCF plots.
push.vp.hh push and pop a grid viewport, turn clipping off, change scale.
Discrete4 Discrete with four levels color dataset.
ResizeEtc Display multiple independent trellis objects on the same coordinated scale.
col3x2 col3x2 color dataset
lmatPairwise lmatPairwise
print.latticeresids Print a latticeresids object.
F.curve plot a chisquare or a F-curve.
LikertPercentCountColumns Display likert plots with percents in the first column of panels and counts in the second column of panels.
OddsRatio Calculate or plot the odds ratio for a 2x2 table of counts.
panel.dotplot.tb Dotplot with evenly spaced tiebreakers.
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Type Package
Date 2016-02-03
License GPL (>= 2)
NeedsCompilation no
Packaged 2016-02-03 06:28:20 UTC; rmh
Repository CRAN
Date/Publication 2016-02-03 22:57:42

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