# HH v3.1-25

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## Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

## Functions in HH

Name | Description | |

combineLimits.trellisvector | Combine limits on a one-dimensional trellis object. | |

diagplot5new | Transpose of ECDF for centered fitted values and residuals from a linear model. | |

anova.ancovaplot | ANOVA table for a c("ancovaplot","trellis") object. | |

ci.plot | Plot confidence and prediction intervals for simple linear regression | |

matrix.trellis | Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work. | |

multicomp.order | Update a multicomp object by ordering its contrasts. | |

as.likert | Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data. | |

hhpdf | R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex | |

if.R | Conditional Execution for R or S-Plus | |

mmc.mean | MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design. | |

tsdiagplot | Times series diagnostic plots for a structured set of ARIMA models. | |

orthog.complete | Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns. | |

defunct | Defunct Functions in Package 'HH' | |

likertMosaic | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style. | |

interval | Prediction and Confidence Intervals for glm Objects | |

ancova | Compute and plot oneway analysis of covariance | |

ladder | Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x. | |

panel.cartesian | trellis panel function, with labeled rows and columns and without strip labels. | |

ancovaplot | Analysis of Covariance Plots | |

pyramidLikert | Print a Likert plot as a Population Triangle | |

as.vector.trellis | Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object. | |

X.residuals | Residuals from the regression of each column of a data.frame against all the other columns. | |

mmcAspect | Control aspect ratio in MMC plots to maintain isomeans grid as a square. | |

dchisq.intermediate | Intermediate f and chisq functions to simplify writing for both R and S-Plus. | |

lm.regsubsets | Evaluate lm model with highest adjusted $R^2$. | |

pdiscunif | Discrete Uniform Distribution | |

plot.hov | Homogeneity of Variance Plot | |

residual.plots.lattice | Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns. | |

emptyMainLeftAxisLeftStripBottomLegend | Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items. | |

HH.regsubsets | Display tabular results for Best Subsets Regression. | |

cp.calc | Rearranges and improves the legibility of the output from the stepwise function in S-Plus. | |

likert | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids. | |

rbind.trellis | Extend matrix reshaping functions to trellis objects. | |

panel.confintMMC | Confidence interval panel for MMC tiebreaker plots, or confidence interval plot. | |

export.eps | Exports a graph to an EPS file. | |

resid.squares | plot squared residuals in inches to match the y-dimension | |

ae.dotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

regrresidplot | Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares. | |

hov | Homogeneity of Variance | |

lmatRows | Find the row numbers in the lmat corresponding to the focus factor. | |

arma.loop | Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs. | |

HH-package | Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland | |

as.matrix.listOfNamedMatrices | Convert a list of matrices to a single matrix | |

AEdotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

diagQQ | QQ plot of regression residuals. | |

positioned-class | Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor. | |

hovBF | Homogeneity of Variance: Brown--Forsyth method | |

bivariateNormal | Plot the bivariate normal density using wireframe for specified rho. | |

strip.background0 | Turn off the coloring in the trellis strip labels. Color 0 is the background color. | |

aovSufficient | Analysis of variance from sufficient statistics for groups. | |

print.TwoTrellisColumns | Print two conformable trellis plots in adjacent columns with user control of widths. | |

anovaMean | ANOVA table from the group sample sizes, means, and standard deviations. | |

legendGrob2wt | place separate keys to the left of each row of a trellis | |

axis.i2wt | specialized axis function for interaction2wt. | |

intxplot | Interaction plot, with an option to print standard error bars. | |

latticeresids | Subroutine used by residual.plots.lattice | |

ResizeEtc.likertPlot | Display multiple independent trellis objects, representing likert plots, on the same coordinated scale. | |

HHscriptnames | Find absolute pathname of a script file for the HH book in the HH package. | |

multicomp.reverse | Force all comparisons in a "multicomp" object to have the same sign. | |

panel.bwplot.intermediate.hh | Panel functions for bwplot. | |

ancova-class | Class "ancova" Analysis of Covariance | |

datasets | Datasets for Statistical Analysis and Data Display, Heiberger and Holland | |

logit | Logistic and odds functions and their inverses. | |

diag.maybe.null | Returns a value for the diagonal of NA and NULL arguments. | |

as.multicomp | Support functions in R for MMC (mean--mean multiple comparisons) plots. | |

residVSfitted | Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat | |

plot.multicomp | Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons. | |

grid.yaxis.hh | make x- and y-axis labels | |

panel.pairs.hh | Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments. | |

hh | Resolve filenames relative to the HH directory. | |

mmc | MMC (Mean--mean Multiple Comparisons) plots. | |

mmcisomeans | Functions used by mmcplot. | |

objip | loop through all attached directories looking for pattern | |

panel.ci.plot | Default Panel Function for ci.plot | |

GSremove | Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet | |

normalApproxBinomial | Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals. | |

npar.arma | Count the number of parameters in an ARIMA model specification. | |

interaction.positioned | interaction method for positioned factors. | |

AEdotplot.data.frame | AE (Adverse Events) dotplot of incidence and relative risk, support functions | |

interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

panel.axis.right | Right-justify right-axis tick labels. | |

NTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial. | |

lmplot | Four types of residual plots for linear models. | |

mmcPruneIsomeans | MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor. | |

OneWayVarPlot | Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model. | |

likertColor | Selection of colors for Likert plots. | |

gof.calculation | Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus. | |

print.NormalAndTplot | Print method for Normal and t plots from NTplot. | |

mmcplot | MMC (Mean-mean Multiple Comparisons) plots in lattice. | |

col.hh | Initializing Trellis Displays | |

glhtWithMCP.993 | Retain averaging behavior that was previously available in glht. | |

norm.curve | plot a normal or a t-curve with both x and z axes. | |

panel.acf | Panel functions for tsdiagplot. | |

cplx | Generate a sequence spanning the xlim of a lattice window. | |

partial.corr | partial correlations | |

mcalinfct | MCA multiple comparisons analysis (pairwise) | |

arima.diag.hh | Repair design error in S-Plus arima.diag | |

extra | Miscellaneous functions that I wish were in or consistent between S-Plus and R. | |

panel.isomeans | isomeans grid for MMC plots. | |

panel.bwplott | Extension to S-Plus trellis to allow transposed plots. | |

seqplot | Time series plot. | |

summary.arma.loop | summary and print and subscript methods for tsdiagplot and related objects. | |

NormalAndTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals. | |

position | Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined. | |

regr1.plot | plot x and y, with optional straight line fit and display of squared residuals | |

lm.case | case statistics for regression analysis | |

useOuterStripsT2L1 | Three-factor generalization of latticeExtra::useOuterStrips | |

panel.xysplom | panel method for xysplom. | |

panel.bwplot.superpose | Panel function for bwplot that displays an entire box in the colors coded by groups. | |

vif | Calculate the Variance Inflation Factor | |

regr2.plot | 3D plot of z against x and y, with regression plane fit and display of squared residuals. | |

strip.xysplom | strip function that is able to place the correlation or regression coefficient into the strip label. | |

sufficient | Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors. | |

seqplot.forecast | seqplot with confidence bands for the forecast region. | |

perspPlane | Helper functions for regr2.plot | |

panel.likert | Panel functions for likert that include a stackWidth argument | |

do.formula.trellis.xysplom | Interprets model formulas for xysplom and extended bwplots | |

xysplom | scatterplot matrix with potentially different sets of variables on the rows and columns. | |

panel.interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

NormalAndTPower | Construct a power graph based on the NTplot. | |

print.tsdiagplot | Print a "tsdiagplot" object. | |

plot.mmc.multicomp | MMC (Mean--mean Multiple Comparisons) plot. | |

residual.plots | Residual plots for a linear model. | |

tsacfplots | Coordinated time series and ACF and PCF plots. | |

push.vp.hh | push and pop a grid viewport, turn clipping off, change scale. | |

Discrete4 | Discrete with four levels color dataset. | |

ResizeEtc | Display multiple independent trellis objects on the same coordinated scale. | |

col3x2 | col3x2 color dataset | |

lmatPairwise | lmatPairwise | |

print.latticeresids | Print a latticeresids object. | |

F.curve | plot a chisquare or a F-curve. | |

LikertPercentCountColumns | Display likert plots with percents in the first column of panels and counts in the second column of panels. | |

OddsRatio | Calculate or plot the odds ratio for a 2x2 table of counts. | |

panel.dotplot.tb | Dotplot with evenly spaced tiebreakers. | |

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## Last month downloads

## Details

Type | Package |

Date | 2016-02-03 |

License | GPL (>= 2) |

NeedsCompilation | no |

Packaged | 2016-02-03 06:28:20 UTC; rmh |

Repository | CRAN |

Date/Publication | 2016-02-03 22:57:42 |

imports | abind , colorspace , grDevices , Hmisc , leaps , RColorBrewer , reshape2 , Rmpfr (>= 0.6.0) , shiny , vcd |

depends | base (>= 3.0.2) , graphics , grid , gridExtra , lattice , latticeExtra , multcomp , R (>= 3.0.2) , stats |

suggests | car , methods , mvtnorm , Rcmdr , RcmdrPlugin , RcmdrPlugin.HH , TeachingDemos |

Contributors | Richard Heiberger |

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