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Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

Functions in HH

Name Description
ancova Compute and plot oneway analysis of covariance
AEdotplot AE (Adverse Events) dotplot of incidence and relative risk
NormalAndTplot Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals.
OneWayVarPlot Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model.
ResizeEtc Display multiple independent trellis objects on the same coordinated scale.
pdiscunif Discrete Uniform Distribution
intxplot Interaction plot, with an option to print standard error bars.
dchisq.intermediate Intermediate f and chisq functions to simplify writing for both R and S-Plus.
ae.dotplot AE (Adverse Events) dotplot of incidence and relative risk
likertMosaic Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style.
HHscriptnames Find absolute pathname of a script file for the HH book in the HH package.
diag.maybe.null Returns a value for the diagonal of NA and NULL arguments.
Discrete4 Discrete with four levels color dataset.
lmplot Four types of residual plots for linear models.
GSremove Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet
gof.calculation Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus.
as.multicomp Support functions in R for MMC (mean--mean multiple comparisons) plots.
AEdotplot.data.frame AE (Adverse Events) dotplot of incidence and relative risk, support functions
X.residuals Residuals from the regression of each column of a data.frame against all the other columns.
col3x2 col3x2 color dataset
panel.axis.right Right-justify right-axis tick labels.
OddsRatio Calculate or plot the odds ratio for a 2x2 table of counts.
F.curve plot a chisquare or a F-curve.
print.latticeresids Print a latticeresids object.
HH.regsubsets Display tabular results for Best Subsets Regression.
lmatRows Find the row numbers in the lmat corresponding to the focus factor.
if.R Conditional Execution for R or S-Plus
cplx Generate a sequence spanning the xlim of a lattice window.
norm.curve plot a normal or a t-curve with both x and z axes.
mmcPruneIsomeans MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor.
defunct Defunct Functions in Package 'HH'
hovBF Homogeneity of Variance: Brown--Forsyth method
axis.i2wt specialized axis function for interaction2wt.
mmcisomeans Functions used by mmcplot.
panel.dotplot.tb Dotplot with evenly spaced tiebreakers.
mmcplot MMC (Mean-mean Multiple Comparisons) plots in lattice.
partial.corr partial correlations
normalApproxBinomial Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals.
perspPlane Helper functions for regr2.plot
NormalAndTPower Construct a power graph based on the NTplot.
ancova-class Class "ancova" Analysis of Covariance
panel.xysplom panel method for xysplom.
diagQQ QQ plot of regression residuals.
anova.ancovaplot ANOVA table for a c("ancovaplot","trellis") object.
likertColor Selection of colors for Likert plots.
LikertPercentCountColumns Display likert plots with percents in the first column of panels and counts in the second column of panels.
interaction.positioned interaction method for positioned factors.
bivariateNormal Plot the bivariate normal density using wireframe for specified rho.
mmc MMC (Mean--mean Multiple Comparisons) plots.
logit Logistic and odds functions and their inverses.
hhpdf R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex
ResizeEtc.likertPlot Display multiple independent trellis objects, representing likert plots, on the same coordinated scale.
strip.background0 Turn off the coloring in the trellis strip labels. Color 0 is the background color.
pyramidLikert Print a Likert plot as a Population Triangle
panel.isomeans isomeans grid for MMC plots.
NTplot Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial.
extra Miscellaneous functions that I wish were in or consistent between S-Plus and R.
lm.case case statistics for regression analysis
multicomp.reverse Force all comparisons in a "multicomp" object to have the same sign.
sufficient Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
regr1.plot plot x and y, with optional straight line fit and display of squared residuals
as.matrix.listOfNamedMatrices Convert a list of matrices to a single matrix
residual.plots.lattice Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns.
plot.hov Homogeneity of Variance Plot
xysplom scatterplot matrix with potentially different sets of variables on the rows and columns.
likert Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids.
ci.plot Plot confidence and prediction intervals for simple linear regression
col.hh Initializing Trellis Displays
glhtWithMCP.993 Retain averaging behavior that was previously available in glht.
arma.loop Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
npar.arma Count the number of parameters in an ARIMA model specification.
print.NormalAndTplot Print method for Normal and t plots from NTplot.
as.vector.trellis Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object.
panel.bwplot.superpose Panel function for bwplot that displays an entire box in the colors coded by groups.
arima.diag.hh Repair design error in S-Plus arima.diag
as.likert Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data.
mmc.mean MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design.
grid.yaxis.hh make x- and y-axis labels
diagplot5new Transpose of ECDF for centered fitted values and residuals from a linear model.
resid.squares plot squared residuals in inches to match the y-dimension
vif Calculate the Variance Inflation Factor
print.TwoTrellisColumns Print two conformable trellis plots in adjacent columns with user control of widths.
cp.calc Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
seqplot Time series plot.
panel.confintMMC Confidence interval panel for MMC tiebreaker plots, or confidence interval plot.
aovSufficient Analysis of variance from sufficient statistics for groups.
combineLimits.trellisvector Combine limits on a one-dimensional trellis object.
push.vp.hh push and pop a grid viewport, turn clipping off, change scale.
panel.interaction2wt Plot all main effects and twoway interactions in a multifactor design
plot.multicomp Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
mcalinfct MCA multiple comparisons analysis (pairwise)
tsdiagplot Times series diagnostic plots for a structured set of ARIMA models.
do.formula.trellis.xysplom Interprets model formulas for xysplom and extended bwplots
lm.regsubsets Evaluate lm model with highest adjusted $R^2$.
emptyMainLeftAxisLeftStripBottomLegend Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items.
matrix.trellis Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work.
mmcAspect Control aspect ratio in MMC plots to maintain isomeans grid as a square.
anovaMean ANOVA table from the group sample sizes, means, and standard deviations.
residual.plots Residual plots for a linear model.
ladder Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
datasets Datasets for Statistical Analysis and Data Display, Heiberger and Holland
panel.likert Panel functions for likert that include a stackWidth argument
hov Homogeneity of Variance
plot.mmc.multicomp MMC (Mean--mean Multiple Comparisons) plot.
position Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
regr2.plot 3D plot of z against x and y, with regression plane fit and display of squared residuals.
lmatPairwise lmatPairwise
tsacfplots Coordinated time series and ACF and PCF plots.
ancovaplot Analysis of Covariance Plots
multicomp.order Update a multicomp object by ordering its contrasts.
strip.xysplom strip function that is able to place the correlation or regression coefficient into the strip label.
print.tsdiagplot Print a "tsdiagplot" object.
export.eps Exports a graph to an EPS file.
panel.bwplott Extension to S-Plus trellis to allow transposed plots.
legendGrob2wt place separate keys to the left of each row of a trellis
panel.bwplot.intermediate.hh Panel functions for bwplot.
panel.acf Panel functions for tsdiagplot.
summary.arma.loop summary and print and subscript methods for tsdiagplot and related objects.
panel.cartesian trellis panel function, with labeled rows and columns and without strip labels.
interaction2wt Plot all main effects and twoway interactions in a multifactor design
panel.pairs.hh Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
objip loop through all attached directories looking for pattern, possibly restricting to specified class or mode.
interval Prediction and Confidence Intervals for glm Objects
hh Resolve filenames relative to the HH directory.
HH-package Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
latticeresids Subroutine used by residual.plots.lattice
positioned-class Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
orthog.complete Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.
panel.ci.plot Default Panel Function for ci.plot
useOuterStripsT2L1 Three-factor generalization of latticeExtra::useOuterStrips
regrresidplot Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares.
rbind.trellis Extend matrix reshaping functions to trellis objects.
residVSfitted Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat
seqplot.forecast seqplot with confidence bands for the forecast region.
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Type Package
Date 2016-04-04
License GPL (>= 2)
NeedsCompilation no
Packaged 2016-04-05 19:09:26 UTC; rmh
Repository CRAN
Date/Publication 2016-04-06 09:42:54

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