# HH v3.1-39

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## Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

## Functions in HH

Name | Description | |

LikertPercentCountColumns | Display likert plots with percents in the first column of panels and counts in the second column of panels. | |

F.curve | plot a chisquare or a F-curve. | |

defunct | Defunct Functions in Package 'HH' | |

ancova | Compute and plot oneway analysis of covariance | |

CIplot | Illustration of the meaning of confidence levels. | |

AEdotplot.data.frame | AE (Adverse Events) dotplot of incidence and relative risk, support functions | |

ancova-class | Class "ancova" Analysis of Covariance | |

ancovaplot | Analysis of Covariance Plots | |

anova.ancovaplot | ANOVA table for a c("ancovaplot","trellis") object. | |

OneWayVarPlot | Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model. | |

NormalAndTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals. | |

anovaMean | ANOVA table from the group sample sizes, means, and standard deviations. | |

AEdotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

X.residuals | Residuals from the regression of each column of a data.frame against all the other columns. | |

ae.dotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

arma.loop | Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs. | |

arima.diag.hh | Repair design error in S-Plus arima.diag | |

col3x2 | col3x2 color dataset | |

diag.maybe.null | Returns a value for the diagonal of NA and NULL arguments. | |

as.vector.trellis | Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object. | |

combineLimits.trellisvector | Combine limits on a one-dimensional trellis object. | |

datasets | Datasets for Statistical Analysis and Data Display, Heiberger and Holland | |

as.multicomp | Support functions in R for MMC (mean--mean multiple comparisons) plots. | |

pdiscunif | Discrete Uniform Distribution | |

bivariateNormal | Plot the bivariate normal density using wireframe for specified rho. | |

export.eps | Exports a graph to an EPS file. | |

axis.i2wt | specialized axis function for interaction2wt. | |

emptyMainLeftAxisLeftStripBottomLegend | Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items. | |

aovSufficient | Analysis of variance from sufficient statistics for groups. | |

dchisq.intermediate | Intermediate f and chisq functions to simplify writing for both R and S-Plus. | |

ci.plot | Plot confidence and prediction intervals for simple linear regression | |

col.hh | Initializing Trellis Displays | |

extra | ||

Discrete4 | Discrete with four levels color dataset. | |

do.formula.trellis.xysplom | Interprets model formulas for xysplom and extended bwplots | |

hovBF | Homogeneity of Variance: Brown--Forsyth method | |

hov | Homogeneity of Variance | |

intxplot | Interaction plot, with an option to print standard error bars. | |

as.likert | Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data. | |

as.matrix.listOfNamedMatrices | Convert a list of matrices to a single matrix | |

ResizeEtc.likertPlot | Display multiple independent trellis objects, representing likert plots, on the same coordinated scale. | |

ResizeEtc | Display multiple independent trellis objects on the same coordinated scale. | |

if.R | Conditional Execution for R or S-Plus | |

interaction.positioned | interaction method for positioned factors. | |

likertMosaic | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style. | |

lm.case | case statistics for regression analysis | |

lm.regsubsets | Evaluate lm model with highest adjusted $R^2$. | |

cp.calc | Rearranges and improves the legibility of the output from the stepwise function in S-Plus. | |

lmatPairwise | lmatPairwise | |

perspPlane | Helper functions for regr2.plot | |

panel.axis.right | Right-justify right-axis tick labels. | |

panel.ci.plot | Default Panel Function for ci.plot | |

print.TwoTrellisColumns | Print two conformable trellis plots in adjacent columns with user control of widths. | |

mmcplot | MMC (Mean-mean Multiple Comparisons) plots in lattice. | |

partial.corr | partial correlations | |

multicomp.order | Update a multicomp object by ordering its contrasts. | |

panel.acf | Panel functions for tsdiagplot. | |

panel.confintMMC | Confidence interval panel for MMC tiebreaker plots, or confidence interval plot. | |

print.latticeresids | Print a latticeresids object. | |

ladder | Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x. | |

strip.useOuterStrips.first | Functions based on strip.default for use with the useOuterScales function. | |

OddsRatio | Calculate or plot the odds ratio for a 2x2 table of counts. | |

likert | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids. | |

mmc.mean | MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design. | |

mmcAspect | Control aspect ratio in MMC plots to maintain isomeans grid as a square. | |

orthog.complete | Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns. | |

likertColor | Selection of colors for Likert plots. | |

strip.xysplom | strip function that is able to place the correlation or regression coefficient into the strip label. | |

panel.bwplott | Extension to S-Plus trellis to allow transposed plots. | |

cplx | Generate a sequence spanning the xlim of a lattice window. | |

tsacfplots | Coordinated time series and ACF and PCF plots. | |

hhpdf | R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex | |

lmatRows | Find the row numbers in the lmat corresponding to the focus factor. | |

diagQQ | QQ plot of regression residuals. | |

logit | Logistic and odds functions and their inverses. | |

lmplot | Four types of residual plots for linear models. | |

grid.yaxis.hh | make x- and y-axis labels | |

diagplot5new | Transpose of ECDF for centered fitted values and residuals from a linear model. | |

NormalAndTPower | Construct a power graph based on the NTplot. | |

matrix.trellis | Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work. | |

tsdiagplot | Times series diagnostic plots for a structured set of ARIMA models. | |

normalApproxBinomial | Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals. | |

panel.isomeans | isomeans grid for MMC plots. | |

mcalinfct | MCA multiple comparisons analysis (pairwise) | |

mmc | MMC (Mean--mean Multiple Comparisons) plots. | |

glhtWithMCP.993 | Retain averaging behavior that was previously available in glht. | |

positioned-class | Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor. | |

gof.calculation | Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus. | |

panel.cartesian | trellis panel function, with labeled rows and columns and without strip labels. | |

print.NormalAndTplot | Print method for Normal and t plots from NTplot. | |

panel.likert | Panel functions for likert that include a stackWidth argument | |

plot.multicomp | Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons. | |

multicomp.reverse | Force all comparisons in a "multicomp" object to have the same sign. | |

norm.curve | plot a normal or a t-curve with both x and z axes. | |

interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

plot.mmc.multicomp | MMC (Mean--mean Multiple Comparisons) plot. | |

panel.interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

panel.dotplot.tb | Dotplot with evenly spaced tiebreakers. | |

plot.hov | Homogeneity of Variance Plot | |

regrresidplot | Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares. | |

latticeresids | Subroutine used by residual.plots.lattice | |

interval | Prediction and Confidence Intervals for glm Objects | |

legendGrob2wt | place separate keys to the left of each row of a trellis | |

position | Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined. | |

mmcPruneIsomeans | MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor. | |

print.tsdiagplot | Print a "tsdiagplot" object. | |

rbind.trellis | Extend matrix reshaping functions to trellis objects. | |

pyramidLikert | Print a Likert plot as a Population Triangle | |

sufficient | Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors. | |

resid.squares | plot squared residuals in inches to match the y-dimension | |

mmcisomeans | Functions used by mmcplot. | |

objip | loop through all attached directories looking for pattern, possibly restricting to specified class or mode. | |

npar.arma | Count the number of parameters in an ARIMA model specification. | |

seqplot.forecast | seqplot with confidence bands for the forecast region. | |

push.vp.hh | push and pop a grid viewport, turn clipping off, change scale. | |

summary.arma.loop | summary and print and subscript methods for tsdiagplot and related objects. | |

panel.bwplot.intermediate.hh | Panel functions for bwplot. | |

panel.bwplot.superpose | Panel function for bwplot that displays an entire box in the colors coded by groups. | |

residVSfitted | Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat | |

residual.plots | Residual plots for a linear model. | |

panel.pairs.hh | Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments. | |

regr1.plot | plot x and y, with optional straight line fit and display of squared residuals | |

regr2.plot | 3D plot of z against x and y, with regression plane fit and display of squared residuals. | |

panel.xysplom | panel method for xysplom. | |

residual.plots.lattice | Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns. | |

strip.background0 | Turn off the coloring in the trellis strip labels. Color 0 is the background color. | |

vif | Calculate the Variance Inflation Factor | |

seqplot | Time series plot. | |

useOuterScales | Put scales for axes only on the bottom and left panels of a lattice display, and give fine control over the placement of strips | |

useOuterStripsT2L1 | Three-factor generalization of latticeExtra::useOuterStrips | |

xysplom | scatterplot matrix with potentially different sets of variables on the rows and columns. | |

HH.regsubsets | Display tabular results for Best Subsets Regression. | |

GSremove | Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet | |

HH-package | HH | |

HHscriptnames | Find absolute pathname of a script file for the HH book in the HH package. | |

NTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial. | |

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## Last month downloads

## Details

Type | Package |

Date | 2019-12-08 |

License | GPL (>= 2) |

NeedsCompilation | no |

Packaged | 2019-12-10 21:59:04 UTC; rmh |

Repository | CRAN |

Date/Publication | 2019-12-11 14:40:06 UTC |

imports | abind , colorspace , grDevices , Hmisc , leaps , methods , RColorBrewer , reshape2 , Rmpfr (>= 0.6.0) , shiny (>= 0.13.1) , vcd |

suggests | car , microplot , mvtnorm , Rcmdr , RcmdrPlugin.HH , TeachingDemos |

depends | graphics , grid , gridExtra (>= 2.0.0) , lattice , latticeExtra , multcomp , R (>= 3.0.2) , stats |

Contributors | Richard Heiberger |

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