HH v3.1-43
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Statistical Analysis and Data Display: Heiberger and Holland
Support software for Statistical Analysis and Data Display (Second Edition, Springer, ISBN 978-1-4939-2121-8, 2015) and (First Edition, Springer, ISBN 0-387-40270-5, 2004) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.
Functions in HH
| Name | Description | |
| F.curve | plot a chisquare or a F-curve. | |
| HH-package | HH | |
| ancova-class | Class "ancova" Analysis of Covariance | |
| defunct | Defunct Functions in Package 'HH' | |
| X.residuals | Residuals from the regression of each column of a data.frame against all the other columns. | |
| aovSufficient | Analysis of variance from sufficient statistics for groups. | |
| ae.dotplot | AE (Adverse Events) dotplot of incidence and relative risk | |
| anovaMean | ANOVA table from the group sample sizes, means, and standard deviations. | |
| Discrete4 | Discrete with four levels color dataset. | |
| CIplot | Illustration of the meaning of confidence levels. | |
| AEdotplot.data.frame | AE (Adverse Events) dotplot of incidence and relative risk, support functions | |
| ancova | Compute and plot oneway analysis of covariance | |
| col3x2 | col3x2 color dataset | |
| HH.regsubsets | Display tabular results for Best Subsets Regression. | |
| LikertPercentCountColumns | Display likert plots with percents in the first column of panels and counts in the second column of panels. | |
| NormalAndTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals. | |
| OneWayVarPlot | Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model. | |
| combineLimits.trellisvector | Combine limits on a one-dimensional trellis object. | |
| NTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals, including normal approximation to the binomial. | |
| hov | Homogeneity of Variance | |
| diagplot5new | Transpose of ECDF for centered fitted values and residuals from a linear model. | |
| hovBF | Homogeneity of Variance: Brown--Forsyth method | |
| diagQQ | QQ plot of regression residuals. | |
| arma.loop | Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs. | |
| arima.diag.hh | Repair design error in S-Plus arima.diag | |
| AEdotplot | AE (Adverse Events) dotplot of incidence and relative risk | |
| ancovaplot | Analysis of Covariance Plots | |
| as.multicomp | Support functions in R for MMC (mean--mean multiple comparisons) plots. | |
| as.vector.trellis | Convert a two-dimensional trellis object into a one-dimensional trellis object. Change the order of panels in a trellis object. | |
| anova.ancovaplot | ANOVA table for a c("ancovaplot","trellis") object. | |
| datasets | Datasets for Statistical Analysis and Data Display, Heiberger and Holland | |
| axis.i2wt | specialized axis function for interaction2wt. | |
| diag.maybe.null | Returns a value for the diagonal of NA and NULL arguments. | |
| bivariateNormal | Plot the bivariate normal density using wireframe for specified rho. | |
| HHscriptnames | Find absolute pathname of a script file for the HH book in the HH package. | |
| extra | ||
| dchisq.intermediate | Intermediate f and chisq functions to simplify writing for both R and S-Plus. | |
| glhtWithMCP.993 | Retain averaging behavior that was previously available in glht. | |
| gof.calculation | Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus. | |
| if.R | Conditional Execution for R or S-Plus | |
| likertMosaic | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style. | |
| interaction.positioned | interaction method for positioned factors. | |
| grid.yaxis.hh | make x- and y-axis labels | |
| hhpdf | R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode, hhpng, hhlatex | |
| lm.case | case statistics for regression analysis | |
| intxplot | Interaction plot, with an option to print standard error bars. | |
| ResizeEtc | Display multiple independent trellis objects on the same coordinated scale. | |
| ladder | Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x. | |
| mmcPruneIsomeans | MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor. | |
| mmcisomeans | Functions used by mmcplot. | |
| lmatRows | Find the row numbers in the lmat corresponding to the focus factor. | |
| lm.regsubsets | Evaluate lm model with highest adjusted $R^2$. | |
| rbind.trellis | Extend matrix reshaping functions to trellis objects. | |
| NormalAndTPower | Construct a power graph based on the NTplot. | |
| normalApproxBinomial | Plots to illustrate Normal Approximation to the Binomial---hypothesis tests or confidence intervals. | |
| pyramidLikert | Print a Likert plot as a Population Triangle | |
| cp.calc | Rearranges and improves the legibility of the output from the stepwise function in S-Plus. | |
| plot.hov | Homogeneity of Variance Plot | |
| plot.mmc.multicomp | MMC (Mean--mean Multiple Comparisons) plot. | |
| lmatPairwise | lmatPairwise | |
| lmplot | Four types of residual plots for linear models. | |
| cplx | Generate a sequence spanning the xlim of a lattice window. | |
| mmc.mean | MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design. | |
| emptyMainLeftAxisLeftStripBottomLegend | Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items. | |
| ResizeEtc.likertPlot | Display multiple independent trellis objects, representing likert plots, on the same coordinated scale. | |
| mmcplot | MMC (Mean-mean Multiple Comparisons) plots in lattice. | |
| export.eps | Exports a graph to an EPS file. | |
| mcalinfct | MCA multiple comparisons analysis (pairwise) | |
| as.likert | Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data. | |
| as.matrix.listOfNamedMatrices | Convert a list of matrices to a single matrix | |
| mmc | MMC (Mean--mean Multiple Comparisons) plots. | |
| interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |
| panel.dotplot.tb | Dotplot with evenly spaced tiebreakers. | |
| mmcAspect | Control aspect ratio in MMC plots to maintain isomeans grid as a square. | |
| multicomp.order | Update a multicomp object by ordering its contrasts. | |
| seqplot.forecast | seqplot with confidence bands for the forecast region. | |
| interval | Prediction and Confidence Intervals for glm Objects | |
| vif | Calculate the Variance Inflation Factor | |
| strip.background0 | Turn off the coloring in the trellis strip labels. Color 0 is the background color. | |
| panel.interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |
| panel.acf | Panel functions for tsdiagplot. | |
| ci.plot | Plot confidence and prediction intervals for simple linear regression | |
| xysplom | scatterplot matrix with potentially different sets of variables on the rows and columns. | |
| panel.pairs.hh | Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments. | |
| panel.bwplott | Extension to S-Plus trellis to allow transposed plots. | |
| panel.xysplom | panel method for xysplom. | |
| panel.cartesian | trellis panel function, with labeled rows and columns and without strip labels. | |
| panel.axis.right | Right-justify right-axis tick labels. | |
| print.TwoTrellisColumns | Print two conformable trellis plots in adjacent columns with user control of widths. | |
| print.latticeresids | Print a latticeresids object. | |
| latticeresids | Subroutine used by residual.plots.lattice | |
| col.hh | Initializing Trellis Displays | |
| legendGrob2wt | place separate keys to the left of each row of a trellis | |
| summary.arma.loop | summary and print and subscript methods for tsdiagplot and related objects. | |
| tsacfplots | Coordinated time series and ACF and PCF plots. | |
| sufficient | Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors. | |
| tsdiagplot | Times series diagnostic plots for a structured set of ARIMA models. | |
| pdiscunif | Discrete Uniform Distribution | |
| do.formula.trellis.xysplom | Interprets model formulas for xysplom and extended bwplots | |
| orthog.complete | Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns. | |
| OddsRatio | Calculate or plot the odds ratio for a 2x2 table of counts. | |
| npar.arma | Count the number of parameters in an ARIMA model specification. | |
| panel.isomeans | isomeans grid for MMC plots. | |
| panel.likert | Panel functions for likert that include a stackWidth argument | |
| objip | loop through all attached directories looking for pattern, possibly restricting to specified class or mode. | |
| position | Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined. | |
| plot.multicomp | Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons. | |
| likertColor | Selection of colors for Likert plots. | |
| regrresidplot | Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares. | |
| likert | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids. | |
| residVSfitted | Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat | |
| positioned-class | Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor. | |
| panel.bwplot.intermediate.hh | Panel functions for bwplot. | |
| print.NormalAndTplot | Print method for Normal and t plots from NTplot. | |
| resid.squares | plot squared residuals in inches to match the y-dimension | |
| panel.bwplot.superpose | Panel function for bwplot that displays an entire box in the colors coded by groups. | |
| logit | Logistic and odds functions and their inverses. | |
| residual.plots | Residual plots for a linear model. | |
| strip.useOuterStrips.first | Functions based on strip.default for use with the useOuterScales function. | |
| matrix.trellis | Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work. | |
| regr1.plot | plot x and y, with optional straight line fit and display of squared residuals | |
| regr2.plot | 3D plot of z against x and y, with regression plane fit and display of squared residuals. | |
| useOuterScales | Put scales for axes only on the bottom and left panels of a lattice display, and give fine control over the placement of strips | |
| strip.xysplom | strip function that is able to place the correlation or regression coefficient into the strip label. | |
| useOuterStripsT2L1 | Three-factor generalization of latticeExtra::useOuterStrips | |
| partial.corr | partial correlations | |
| print.tsdiagplot | Print a "tsdiagplot" object. | |
| perspPlane | Helper functions for regr2.plot | |
| panel.confintMMC | Confidence interval panel for MMC tiebreaker plots, or confidence interval plot. | |
| panel.ci.plot | Default Panel Function for ci.plot | |
| multicomp.reverse | Force all comparisons in a "multicomp" object to have the same sign. | |
| norm.curve | plot a normal or a t-curve with both x and z axes. | |
| push.vp.hh | push and pop a grid viewport, turn clipping off, change scale. | |
| seqplot | Time series plot. | |
| residual.plots.lattice | Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns. | |
| GSremove | Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet | |
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Details
| Type | Package |
| Date | 2020-11-27 |
| License | GPL (>= 2) |
| NeedsCompilation | no |
| Packaged | 2020-11-28 00:02:22 UTC; rmh |
| Repository | CRAN |
| Date/Publication | 2020-11-28 05:30:02 UTC |
| imports | abind , colorspace , grDevices , Hmisc , leaps , methods , RColorBrewer , reshape2 , Rmpfr (>= 0.6.0) , shiny (>= 0.13.1) , vcd |
| suggests | car , microplot , mvtnorm , Rcmdr , RcmdrPlugin.HH , TeachingDemos |
| depends | graphics , grid , gridExtra (>= 2.0.0) , lattice , latticeExtra , multcomp , R (>= 3.0.2) , stats |
| Contributors | Richard Heiberger |
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