# HH v3.1-5

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## Statistical Analysis and Data Display: Heiberger and Holland

Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN x-xxx-xxxxx-x, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

## Functions in HH

Name | Description | |

HH.regsubsets | Display tabular results for Best Subsets Regression. | |

ancova-class | Class "ancova" Analysis of Covariance | |

mmc.mean | MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design. | |

extra | Miscellaneous functions that I wish were in or consistent between S-Plus and R. | |

if.R | Conditional Execution for R or S-Plus | |

ladder | Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x. | |

intxplot | Interaction plot, with an option to print standard error bars. | |

export.eps | Exports a graph to an EPS file. | |

lmatRows | Find the row numbers in the lmat corresponding to the focus factor. | |

interaction.positioned | interaction method for positioned factors. | |

emptyMainLeftAxisLeftStripBottomLegend | Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items. | |

print.tsdiagplot | Print a "tsdiagplot" object. | |

resid.squares | plot squared residuals in inches to match the y-dimension | |

likertMosaic | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style. | |

aovSufficient | Analysis of variance from sufficient statistics for groups. | |

ae.dotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

print.TwoTrellisColumns | Print two conformable trellis plots in adjacent columns with user control of widths. | |

AEdotplot | AE (Adverse Events) dotplot of incidence and relative risk | |

datasets | Datasets for Statistical Analysis and Data Display, Heiberger and Holland | |

HH-package | Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland | |

gof.calculation | Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus. | |

diagplot5new | Transpose of ECDF for centered fitted values and residuals from a linear model. | |

perspPlane | Helper functions for regr2.plot | |

mcalinfct | MCA multiple comparisons analysis (pairwise) | |

rbind.trellis | Extend matrix reshaping functions to trellis objects. | |

cp.calc | Rearranges and improves the legibility of the output from the stepwise function in S-Plus. | |

interval | Prediction and Confidence Intervals for glm Objects | |

arima.diag.hh | Repair design error in S-Plus arima.diag | |

npar.arma | Count the number of parameters in an ARIMA model specification. | |

ResizeEtc.likertPlot | Display multiple independent trellis objects, representing likert plots, on the same coordinated scale. | |

hovBF | Homogeneity of Variance: Brown--Forsyth method | |

hov | Homogeneity of Variance | |

norm.curve | plot a normal or a t-curve with both x and z axes. | |

mmcisomeans | Functions used by mmcplot. | |

tsdiagplot | Times series diagnostic plots for a structured set of ARIMA models. | |

likertColor | Selection of colors for Likert plots. | |

residual.plots.lattice | Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns. | |

positioned-class | Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor. | |

panel.bwplot.superpose | Panel function for bwplot that displays an entire box in the colors coded by groups. | |

ancova | Compute and plot oneway analysis of covariance | |

matrix.trellis | Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work. | |

ResizeEtc | Display multiple independent trellis objects on the same coordinated scale. | |

mmcPruneIsomeans | MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor. | |

HHscriptnames | Find absolute pathname of a script file for the HH book in the HH package. | |

multicomp.reverse | Force all comparisons in a "multicomp" object to have the same sign. | |

t.trellis | Interchange the x- and y-axes for an S-Plus trellis object. Interchange the conditioning variables for an R trellis object. | |

as.likert | Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data. | |

as.matrix.listOfNamedMatrices | Convert a list of matrices to a single matrix | |

AEdotplot.data.frame | AE (Adverse Events) dotplot of incidence and relative risk, support functions | |

plot.hov | Homogeneity of Variance Plot | |

LikertPercentCountColumns | Display likert plots with percents in the first column of panels and counts in the second column of panels. | |

ci.plot | Plot confidence and prediction intervals for simple linear regression | |

OneWayVarPlot | Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model. | |

do.formula.trellis.xysplom | Interprets model formulas for xysplom and extended bwplots | |

multicomp.order | Update a multicomp object by ordering its contrasts. | |

axis.i2wt | specialized axis function for interaction2wt. | |

as.vector.trellis | Convert a two-dimensional trellis object into a one-dimensional trellis object. | |

panel.xysplom | panel method for xysplom. | |

anova.ancovaplot | ANOVA table for a c("ancovaplot","trellis") object. | |

panel.bwplott | Extension to S-Plus trellis to allow transposed plots. | |

mmcAspect | Control aspect ratio in MMC plots to maintain isomeans grid as a square. | |

X.residuals | Residuals from the regression of each column of a data.frame against all the other columns. | |

arma.loop | Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs. | |

pdiscunif | Discrete Uniform Distribution | |

sufficient | Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors. | |

strip.xysplom | strip function that is able to place the correlation or regression coefficient into the strip label. | |

dchisq.intermediate | Intermediate f and chisq functions to simplify writing for both R and S-Plus. | |

position | Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined. | |

glhtWithMCP.993 | Retain averaging behavior that was previously available in glht. | |

cplx | Generate a sequence spanning the xlim of a lattice window. | |

regr1.plot | plot x and y, with optional straight line fit and display of squared residuals | |

ancovaplot | Analysis of Covariance Plots | |

panel.bwplot.intermediate.hh | Panel functions for bwplot. | |

print.latticeresids | Print a latticeresids object. | |

anovaMean | ANOVA table from the group sample sizes, means, and standard deviations. | |

combineLimits.trellisvector | Combine limits on a one-dimensional trellis object. | |

col.hh | Initializing Trellis Displays | |

lmplot | Four types of residual plots for linear models. | |

grid.yaxis.hh | make x- and y-axis labels | |

mmcplot | MMC (Mean-mean Multiple Comparisons) plots in lattice. | |

panel.cartesian | trellis panel function, with labeled rows and columns and without strip labels. | |

regr2.plot | 3D plot of z against x and y, with regression plane fit and display of squared residuals. | |

panel.pairs.hh | Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments. | |

seqplot.forecast | seqplot with confidence bands for the forecast region. | |

panel.ci.plot | Default Panel Function for ci.plot | |

residVSfitted | Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat | |

strip.background0 | Turn off the coloring in the trellis strip labels. Color 0 is the background color. | |

panel.axis.right | Right-justify right-axis tick labels. | |

diagQQ | QQ plot of regression residuals. | |

hh | Resolve filenames relative to the HH directory. | |

panel.confintMMC | Confidence interval panel for MMC tiebreaker plots, or confidence interval plot. | |

defunct | Defunct Functions in Package 'HH' | |

partial.corr | partial correlations | |

summary.arma.loop | summary and print and subscript methods for tsdiagplot and related objects. | |

plot.multicomp | Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons. | |

plot.mmc.multicomp | MMC (Mean--mean Multiple Comparisons) plot. | |

F.curve | plot a chisquare or a F-curve. | |

tsacfplots | Coordinated time series and ACF and PCF plots. | |

panel.likert | Panel functions for likert that include a stackWidth argument | |

seqplot | Time series plot. | |

pyramidLikert | Print a Likert plot as a Population Triangle | |

lm.case | case statistics for regression analysis | |

mmc | MMC (Mean--mean Multiple Comparisons) plots. | |

diag.maybe.null | Returns a value for the diagonal of NA and NULL arguments. | |

panel.dotplot.tb | Dotplot with evenly spaced tiebreakers. | |

interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

hhpdf | R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode | |

lm.regsubsets | Evaluate lm model with highest adjusted $R^2$. | |

objip | loop through all attached directories looking for pattern | |

logit | Logistic and odds functions and their inverses. | |

vif | Calculate the Variance Inflation Factor | |

xysplom | scatterplot matrix with potentially different sets of variables on the rows and columns. | |

OddsRatio | Calculate or plot the odds ratio for a 2x2 table of counts. | |

push.vp.hh | push and pop a grid viewport, turn clipping off, change scale. | |

residual.plots | Residual plots for a linear model. | |

GSremove | Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet | |

regrresidplot | Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares. | |

as.multicomp | Support functions in R for MMC (mean--mean multiple comparisons) plots. | |

panel.acf | Panel functions for tsdiagplot. | |

likert | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids. | |

legendGrob2wt | place separate keys to the left of each row of a trellis | |

panel.isomeans | isomeans grid for MMC plots. | |

latticeresids | Subroutine used by residual.plots.lattice | |

useOuterStripsT2L1 | Three-factor generalization of latticeExtra::useOuterStrips | |

panel.interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |

orthog.complete | Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns. | |

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## Last month downloads

## Details

Type | Package |

Date | 2014-09-11 |

License | GPL (>= 2) |

Packaged | 2014-09-12 01:58:32 UTC; rmh |

NeedsCompilation | no |

Repository | CRAN |

Date/Publication | 2014-09-13 08:34:04 |

suggests | abind , car , methods , mvtnorm , RcmdrPlugin , RcmdrPlugin.HH |

depends | base (>= 3.0.2) , grid , lattice , latticeExtra , multcomp , R (>= 3.0.2) , stats |

imports | colorspace , leaps , Rcmdr , RColorBrewer , reshape2 , vcd |

Contributors | Richard Heiberger |

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