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HH (version 3.1-5)

Statistical Analysis and Data Display: Heiberger and Holland

Description

Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN x-xxx-xxxxx-x, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

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Version

Install

install.packages('HH')

Monthly Downloads

5,991

Version

3.1-5

License

GPL (>= 2)

Maintainer

Richard Heiberger

Last Published

September 13th, 2014

Functions in HH (3.1-5)

HH.regsubsets

Display tabular results for Best Subsets Regression.
ancova-class

Class "ancova" Analysis of Covariance
mmc.mean

MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design.
extra

Miscellaneous functions that I wish were in or consistent between S-Plus and R.
if.R

Conditional Execution for R or S-Plus
ladder

Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
intxplot

Interaction plot, with an option to print standard error bars.
export.eps

Exports a graph to an EPS file.
lmatRows

Find the row numbers in the lmat corresponding to the focus factor.
interaction.positioned

interaction method for positioned factors.
emptyMainLeftAxisLeftStripBottomLegend

Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items.
print.tsdiagplot

Print a "tsdiagplot" object.
resid.squares

plot squared residuals in inches to match the y-dimension
likertMosaic

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style.
aovSufficient

Analysis of variance from sufficient statistics for groups.
ae.dotplot

AE (Adverse Events) dotplot of incidence and relative risk
print.TwoTrellisColumns

Print two conformable trellis plots in adjacent columns with user control of widths.
AEdotplot

AE (Adverse Events) dotplot of incidence and relative risk
datasets

Datasets for Statistical Analysis and Data Display, Heiberger and Holland
HH-package

Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
gof.calculation

Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus.
diagplot5new

Transpose of ECDF for centered fitted values and residuals from a linear model.
perspPlane

Helper functions for regr2.plot
mcalinfct

MCA multiple comparisons analysis (pairwise)
rbind.trellis

Extend matrix reshaping functions to trellis objects.
cp.calc

Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
interval

Prediction and Confidence Intervals for glm Objects
arima.diag.hh

Repair design error in S-Plus arima.diag
npar.arma

Count the number of parameters in an ARIMA model specification.
ResizeEtc.likertPlot

Display multiple independent trellis objects, representing likert plots, on the same coordinated scale.
hovBF

Homogeneity of Variance: Brown--Forsyth method
hov

Homogeneity of Variance
norm.curve

plot a normal or a t-curve with both x and z axes.
mmcisomeans

Functions used by mmcplot.
tsdiagplot

Times series diagnostic plots for a structured set of ARIMA models.
likertColor

Selection of colors for Likert plots.
residual.plots.lattice

Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns.
positioned-class

Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
panel.bwplot.superpose

Panel function for bwplot that displays an entire box in the colors coded by groups.
ancova

Compute and plot oneway analysis of covariance
matrix.trellis

Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work.
ResizeEtc

Display multiple independent trellis objects on the same coordinated scale.
mmcPruneIsomeans

MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor.
HHscriptnames

Find absolute pathname of a script file for the HH book in the HH package.
multicomp.reverse

Force all comparisons in a "multicomp" object to have the same sign.
t.trellis

Interchange the x- and y-axes for an S-Plus trellis object. Interchange the conditioning variables for an R trellis object.
as.likert

Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data.
as.matrix.listOfNamedMatrices

Convert a list of matrices to a single matrix
AEdotplot.data.frame

AE (Adverse Events) dotplot of incidence and relative risk, support functions
plot.hov

Homogeneity of Variance Plot
LikertPercentCountColumns

Display likert plots with percents in the first column of panels and counts in the second column of panels.
ci.plot

Plot confidence and prediction intervals for simple linear regression
OneWayVarPlot

Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model.
do.formula.trellis.xysplom

Interprets model formulas for xysplom and extended bwplots
multicomp.order

Update a multicomp object by ordering its contrasts.
axis.i2wt

specialized axis function for interaction2wt.
as.vector.trellis

Convert a two-dimensional trellis object into a one-dimensional trellis object.
panel.xysplom

panel method for xysplom.
anova.ancovaplot

ANOVA table for a c("ancovaplot","trellis") object.
panel.bwplott

Extension to S-Plus trellis to allow transposed plots.
mmcAspect

Control aspect ratio in MMC plots to maintain isomeans grid as a square.
X.residuals

Residuals from the regression of each column of a data.frame against all the other columns.
arma.loop

Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
pdiscunif

Discrete Uniform Distribution
sufficient

Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
strip.xysplom

strip function that is able to place the correlation or regression coefficient into the strip label.
dchisq.intermediate

Intermediate f and chisq functions to simplify writing for both R and S-Plus.
position

Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
glhtWithMCP.993

Retain averaging behavior that was previously available in glht.
cplx

Generate a sequence spanning the xlim of a lattice window.
regr1.plot

plot x and y, with optional straight line fit and display of squared residuals
ancovaplot

Analysis of Covariance Plots
panel.bwplot.intermediate.hh

Panel functions for bwplot.
print.latticeresids

Print a latticeresids object.
anovaMean

ANOVA table from the group sample sizes, means, and standard deviations.
combineLimits.trellisvector

Combine limits on a one-dimensional trellis object.
col.hh

Initializing Trellis Displays
lmplot

Four types of residual plots for linear models.
grid.yaxis.hh

make x- and y-axis labels
mmcplot

MMC (Mean-mean Multiple Comparisons) plots in lattice.
panel.cartesian

trellis panel function, with labeled rows and columns and without strip labels.
regr2.plot

3D plot of z against x and y, with regression plane fit and display of squared residuals.
panel.pairs.hh

Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
seqplot.forecast

seqplot with confidence bands for the forecast region.
panel.ci.plot

Default Panel Function for ci.plot
residVSfitted

Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat
strip.background0

Turn off the coloring in the trellis strip labels. Color 0 is the background color.
panel.axis.right

Right-justify right-axis tick labels.
diagQQ

QQ plot of regression residuals.
hh

Resolve filenames relative to the HH directory.
panel.confintMMC

Confidence interval panel for MMC tiebreaker plots, or confidence interval plot.
defunct

Defunct Functions in Package 'HH'
partial.corr

partial correlations
summary.arma.loop

summary and print and subscript methods for tsdiagplot and related objects.
plot.multicomp

Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
plot.mmc.multicomp

MMC (Mean--mean Multiple Comparisons) plot.
F.curve

plot a chisquare or a F-curve.
tsacfplots

Coordinated time series and ACF and PCF plots.
panel.likert

Panel functions for likert that include a stackWidth argument
seqplot

Time series plot.
pyramidLikert

Print a Likert plot as a Population Triangle
lm.case

case statistics for regression analysis
mmc

MMC (Mean--mean Multiple Comparisons) plots.
diag.maybe.null

Returns a value for the diagonal of NA and NULL arguments.
panel.dotplot.tb

Dotplot with evenly spaced tiebreakers.
interaction2wt

Plot all main effects and twoway interactions in a multifactor design
hhpdf

R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode
lm.regsubsets

Evaluate lm model with highest adjusted $R^2$.
objip

loop through all attached directories looking for pattern
logit

Logistic and odds functions and their inverses.
vif

Calculate the Variance Inflation Factor
xysplom

scatterplot matrix with potentially different sets of variables on the rows and columns.
OddsRatio

Calculate or plot the odds ratio for a 2x2 table of counts.
push.vp.hh

push and pop a grid viewport, turn clipping off, change scale.
residual.plots

Residual plots for a linear model.
GSremove

Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet
regrresidplot

Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares.
as.multicomp

Support functions in R for MMC (mean--mean multiple comparisons) plots.
panel.acf

Panel functions for tsdiagplot.
likert

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids.
legendGrob2wt

place separate keys to the left of each row of a trellis
panel.isomeans

isomeans grid for MMC plots.
latticeresids

Subroutine used by residual.plots.lattice
useOuterStripsT2L1

Three-factor generalization of latticeExtra::useOuterStrips
panel.interaction2wt

Plot all main effects and twoway interactions in a multifactor design
orthog.complete

Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.