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HH (version 3.1-8)

Statistical Analysis and Data Display: Heiberger and Holland

Description

Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.

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Version

Install

install.packages('HH')

Monthly Downloads

5,991

Version

3.1-8

License

GPL (>= 2)

Maintainer

Richard Heiberger

Last Published

December 17th, 2014

Functions in HH (3.1-8)

HH-package

Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland
arima.diag.hh

Repair design error in S-Plus arima.diag
as.multicomp

Support functions in R for MMC (mean--mean multiple comparisons) plots.
cp.calc

Rearranges and improves the legibility of the output from the stepwise function in S-Plus.
ResizeEtc.likertPlot

Display multiple independent trellis objects, representing likert plots, on the same coordinated scale.
hhpdf

R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode
dchisq.intermediate

Intermediate f and chisq functions to simplify writing for both R and S-Plus.
anovaMean

ANOVA table from the group sample sizes, means, and standard deviations.
anova.ancovaplot

ANOVA table for a c("ancovaplot","trellis") object.
pdiscunif

Discrete Uniform Distribution
multicomp.order

Update a multicomp object by ordering its contrasts.
AEdotplot.data.frame

AE (Adverse Events) dotplot of incidence and relative risk, support functions
HHscriptnames

Find absolute pathname of a script file for the HH book in the HH package.
emptyMainLeftAxisLeftStripBottomLegend

Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items.
datasets

Datasets for Statistical Analysis and Data Display, Heiberger and Holland
AEdotplot

AE (Adverse Events) dotplot of incidence and relative risk
F.curve

plot a chisquare or a F-curve.
grid.yaxis.hh

make x- and y-axis labels
interaction.positioned

interaction method for positioned factors.
HH.regsubsets

Display tabular results for Best Subsets Regression.
export.eps

Exports a graph to an EPS file.
hh

Resolve filenames relative to the HH directory.
ae.dotplot

AE (Adverse Events) dotplot of incidence and relative risk
as.vector.trellis

Convert a two-dimensional trellis object into a one-dimensional trellis object.
hov

Homogeneity of Variance
ancova-class

Class "ancova" Analysis of Covariance
diagQQ

QQ plot of regression residuals.
diag.maybe.null

Returns a value for the diagonal of NA and NULL arguments.
ResizeEtc

Display multiple independent trellis objects on the same coordinated scale.
glhtWithMCP.993

Retain averaging behavior that was previously available in glht.
ladder

Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x.
OneWayVarPlot

Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model.
LikertPercentCountColumns

Display likert plots with percents in the first column of panels and counts in the second column of panels.
GSremove

Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet
interaction2wt

Plot all main effects and twoway interactions in a multifactor design
intxplot

Interaction plot, with an option to print standard error bars.
hovBF

Homogeneity of Variance: Brown--Forsyth method
as.matrix.listOfNamedMatrices

Convert a list of matrices to a single matrix
push.vp.hh

push and pop a grid viewport, turn clipping off, change scale.
ancovaplot

Analysis of Covariance Plots
residVSfitted

Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat
combineLimits.trellisvector

Combine limits on a one-dimensional trellis object.
defunct

Defunct Functions in Package 'HH'
X.residuals

Residuals from the regression of each column of a data.frame against all the other columns.
partial.corr

partial correlations
interval

Prediction and Confidence Intervals for glm Objects
latticeresids

Subroutine used by residual.plots.lattice
as.likert

Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data.
orthog.complete

Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns.
print.tsdiagplot

Print a "tsdiagplot" object.
panel.acf

Panel functions for tsdiagplot.
ci.plot

Plot confidence and prediction intervals for simple linear regression
panel.likert

Panel functions for likert that include a stackWidth argument
arma.loop

Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs.
col.hh

Initializing Trellis Displays
axis.i2wt

specialized axis function for interaction2wt.
resid.squares

plot squared residuals in inches to match the y-dimension
cplx

Generate a sequence spanning the xlim of a lattice window.
likert

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids.
mmcisomeans

Functions used by mmcplot.
mcalinfct

MCA multiple comparisons analysis (pairwise)
bivariateNormal

Plot the bivariate normal density using wireframe for specified rho.
panel.confintMMC

Confidence interval panel for MMC tiebreaker plots, or confidence interval plot.
perspPlane

Helper functions for regr2.plot
print.latticeresids

Print a latticeresids object.
lmplot

Four types of residual plots for linear models.
objip

loop through all attached directories looking for pattern
likertMosaic

Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style.
panel.cartesian

trellis panel function, with labeled rows and columns and without strip labels.
residual.plots

Residual plots for a linear model.
diagplot5new

Transpose of ECDF for centered fitted values and residuals from a linear model.
likertColor

Selection of colors for Likert plots.
npar.arma

Count the number of parameters in an ARIMA model specification.
legendGrob2wt

place separate keys to the left of each row of a trellis
lm.case

case statistics for regression analysis
mmcplot

MMC (Mean-mean Multiple Comparisons) plots in lattice.
gof.calculation

Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus.
tsdiagplot

Times series diagnostic plots for a structured set of ARIMA models.
seqplot

Time series plot.
panel.interaction2wt

Plot all main effects and twoway interactions in a multifactor design
t.trellis

Interchange the x- and y-axes for an S-Plus trellis object. Interchange the conditioning variables for an R trellis object.
mmc

MMC (Mean--mean Multiple Comparisons) plots.
regr1.plot

plot x and y, with optional straight line fit and display of squared residuals
if.R

Conditional Execution for R or S-Plus
lmatRows

Find the row numbers in the lmat corresponding to the focus factor.
regr2.plot

3D plot of z against x and y, with regression plane fit and display of squared residuals.
aovSufficient

Analysis of variance from sufficient statistics for groups.
panel.dotplot.tb

Dotplot with evenly spaced tiebreakers.
lm.regsubsets

Evaluate lm model with highest adjusted $R^2$.
ancova

Compute and plot oneway analysis of covariance
multicomp.reverse

Force all comparisons in a "multicomp" object to have the same sign.
extra

Miscellaneous functions that I wish were in or consistent between S-Plus and R.
vif

Calculate the Variance Inflation Factor
do.formula.trellis.xysplom

Interprets model formulas for xysplom and extended bwplots
panel.bwplot.intermediate.hh

Panel functions for bwplot.
summary.arma.loop

summary and print and subscript methods for tsdiagplot and related objects.
NormalAndTplot

Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals.
matrix.trellis

Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work.
positioned-class

Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor.
mmc.mean

MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design.
mmcPruneIsomeans

MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor.
OddsRatio

Calculate or plot the odds ratio for a 2x2 table of counts.
logit

Logistic and odds functions and their inverses.
norm.curve

plot a normal or a t-curve with both x and z axes.
panel.bwplot.superpose

Panel function for bwplot that displays an entire box in the colors coded by groups.
strip.xysplom

strip function that is able to place the correlation or regression coefficient into the strip label.
NormalAndT.power

Construct a power graph based on the NormalAndT plot.
mmcAspect

Control aspect ratio in MMC plots to maintain isomeans grid as a square.
panel.axis.right

Right-justify right-axis tick labels.
plot.hov

Homogeneity of Variance Plot
xysplom

scatterplot matrix with potentially different sets of variables on the rows and columns.
regrresidplot

Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares.
position

Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined.
panel.xysplom

panel method for xysplom.
residual.plots.lattice

Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns.
plot.mmc.multicomp

MMC (Mean--mean Multiple Comparisons) plot.
plot.multicomp

Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons.
print.TwoTrellisColumns

Print two conformable trellis plots in adjacent columns with user control of widths.
useOuterStripsT2L1

Three-factor generalization of latticeExtra::useOuterStrips
pyramidLikert

Print a Likert plot as a Population Triangle
panel.pairs.hh

Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments.
panel.bwplott

Extension to S-Plus trellis to allow transposed plots.
panel.isomeans

isomeans grid for MMC plots.
rbind.trellis

Extend matrix reshaping functions to trellis objects.
tsacfplots

Coordinated time series and ACF and PCF plots.
sufficient

Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors.
strip.background0

Turn off the coloring in the trellis strip labels. Color 0 is the background color.
panel.ci.plot

Default Panel Function for ci.plot
seqplot.forecast

seqplot with confidence bands for the forecast region.