HH v3.1-8
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Statistical Analysis and Data Display: Heiberger and Holland
Support software for Statistical Analysis and Data Display (First Edition, Springer, ISBN 0-387-40270-5, 2004) and (Second Edition, Springer, ISBN 978-1-4939-2121-8, anticipated 2015) by Richard M. Heiberger and Burt Holland. This contemporary presentation of statistical methods features extensive use of graphical displays for exploring data and for displaying the analysis. The second edition includes redesigned graphics and additional chapters. The authors emphasize how to construct and interpret graphs, discuss principles of graphical design, and show how accompanying traditional tabular results are used to confirm the visual impressions derived directly from the graphs. Many of the graphical formats are novel and appear here for the first time in print. All chapters have exercises. All functions introduced in the book are in the package. R code for all examples, both graphs and tables, in the book is included in the scripts directory of the package.
Functions in HH
| Name | Description | |
| HH-package | Support software for Statistical Analysis and Data Display by Richard M. Heiberger and Burt Holland | |
| arima.diag.hh | Repair design error in S-Plus arima.diag | |
| as.multicomp | Support functions in R for MMC (mean--mean multiple comparisons) plots. | |
| cp.calc | Rearranges and improves the legibility of the output from the stepwise function in S-Plus. | |
| ResizeEtc.likertPlot | Display multiple independent trellis objects, representing likert plots, on the same coordinated scale. | |
| hhpdf | R tools for writing HH2: hhpdf, hhdev.off, hhcapture, hhcode | |
| dchisq.intermediate | Intermediate f and chisq functions to simplify writing for both R and S-Plus. | |
| anovaMean | ANOVA table from the group sample sizes, means, and standard deviations. | |
| anova.ancovaplot | ANOVA table for a c("ancovaplot","trellis") object. | |
| pdiscunif | Discrete Uniform Distribution | |
| multicomp.order | Update a multicomp object by ordering its contrasts. | |
| AEdotplot.data.frame | AE (Adverse Events) dotplot of incidence and relative risk, support functions | |
| HHscriptnames | Find absolute pathname of a script file for the HH book in the HH package. | |
| emptyMainLeftAxisLeftStripBottomLegend | Remove main title, left axis tick labels, left strip, bottom legend from plot and keep the vertical spacing allocated to those items. | |
| datasets | Datasets for Statistical Analysis and Data Display, Heiberger and Holland | |
| AEdotplot | AE (Adverse Events) dotplot of incidence and relative risk | |
| F.curve | plot a chisquare or a F-curve. | |
| grid.yaxis.hh | make x- and y-axis labels | |
| interaction.positioned | interaction method for positioned factors. | |
| HH.regsubsets | Display tabular results for Best Subsets Regression. | |
| export.eps | Exports a graph to an EPS file. | |
| hh | Resolve filenames relative to the HH directory. | |
| ae.dotplot | AE (Adverse Events) dotplot of incidence and relative risk | |
| as.vector.trellis | Convert a two-dimensional trellis object into a one-dimensional trellis object. | |
| hov | Homogeneity of Variance | |
| ancova-class | Class "ancova" Analysis of Covariance | |
| diagQQ | QQ plot of regression residuals. | |
| diag.maybe.null | Returns a value for the diagonal of NA and NULL arguments. | |
| ResizeEtc | Display multiple independent trellis objects on the same coordinated scale. | |
| glhtWithMCP.993 | Retain averaging behavior that was previously available in glht. | |
| ladder | Draw a "ladder of powers" plot, plotting each of several powers of y against the same powers of x. | |
| OneWayVarPlot | Displays a three-panel bwplot of the data by group, of the group means, and of the entire dataset. This is an approximate visualization of the Mean Square lines from the ANOVA table for a one-way ANOVA model. | |
| LikertPercentCountColumns | Display likert plots with percents in the first column of panels and counts in the second column of panels. | |
| GSremove | Remove selected GraphSheetPages in the S-Plus Windows GUI Graphsheet | |
| interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |
| intxplot | Interaction plot, with an option to print standard error bars. | |
| hovBF | Homogeneity of Variance: Brown--Forsyth method | |
| as.matrix.listOfNamedMatrices | Convert a list of matrices to a single matrix | |
| push.vp.hh | push and pop a grid viewport, turn clipping off, change scale. | |
| ancovaplot | Analysis of Covariance Plots | |
| residVSfitted | Draw plots of resid ~ y.hat and sqrt(abs(resid)) ~ y.hat | |
| combineLimits.trellisvector | Combine limits on a one-dimensional trellis object. | |
| defunct | Defunct Functions in Package 'HH' | |
| X.residuals | Residuals from the regression of each column of a data.frame against all the other columns. | |
| partial.corr | partial correlations | |
| interval | Prediction and Confidence Intervals for glm Objects | |
| latticeresids | Subroutine used by residual.plots.lattice | |
| as.likert | Support functions for diverging stacked barcharts for Likert, semantic differential, and rating scale data. | |
| orthog.complete | Construct an orthogonal matrix which is an arbitrary completion of the column space of the input set of columns. | |
| print.tsdiagplot | Print a "tsdiagplot" object. | |
| panel.acf | Panel functions for tsdiagplot. | |
| ci.plot | Plot confidence and prediction intervals for simple linear regression | |
| panel.likert | Panel functions for likert that include a stackWidth argument | |
| arma.loop | Loop through a series of ARIMA models and display coordinated tables and diagnoastic graphs. | |
| col.hh | Initializing Trellis Displays | |
| axis.i2wt | specialized axis function for interaction2wt. | |
| resid.squares | plot squared residuals in inches to match the y-dimension | |
| cplx | Generate a sequence spanning the xlim of a lattice window. | |
| likert | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids. | |
| mmcisomeans | Functions used by mmcplot. | |
| mcalinfct | MCA multiple comparisons analysis (pairwise) | |
| bivariateNormal | Plot the bivariate normal density using wireframe for specified rho. | |
| panel.confintMMC | Confidence interval panel for MMC tiebreaker plots, or confidence interval plot. | |
| perspPlane | Helper functions for regr2.plot | |
| print.latticeresids | Print a latticeresids object. | |
| lmplot | Four types of residual plots for linear models. | |
| objip | loop through all attached directories looking for pattern | |
| likertMosaic | Diverging stacked barcharts for Likert, semantic differential, rating scale data, and population pyramids based on mosaic as the plotting style. | |
| panel.cartesian | trellis panel function, with labeled rows and columns and without strip labels. | |
| residual.plots | Residual plots for a linear model. | |
| diagplot5new | Transpose of ECDF for centered fitted values and residuals from a linear model. | |
| likertColor | Selection of colors for Likert plots. | |
| npar.arma | Count the number of parameters in an ARIMA model specification. | |
| legendGrob2wt | place separate keys to the left of each row of a trellis | |
| lm.case | case statistics for regression analysis | |
| mmcplot | MMC (Mean-mean Multiple Comparisons) plots in lattice. | |
| gof.calculation | Calculate Box--Ljung Goodness of Fit for ARIMA models in S-Plus. | |
| tsdiagplot | Times series diagnostic plots for a structured set of ARIMA models. | |
| seqplot | Time series plot. | |
| panel.interaction2wt | Plot all main effects and twoway interactions in a multifactor design | |
| t.trellis | Interchange the x- and y-axes for an S-Plus trellis object. Interchange the conditioning variables for an R trellis object. | |
| mmc | MMC (Mean--mean Multiple Comparisons) plots. | |
| regr1.plot | plot x and y, with optional straight line fit and display of squared residuals | |
| if.R | Conditional Execution for R or S-Plus | |
| lmatRows | Find the row numbers in the lmat corresponding to the focus factor. | |
| regr2.plot | 3D plot of z against x and y, with regression plane fit and display of squared residuals. | |
| aovSufficient | Analysis of variance from sufficient statistics for groups. | |
| panel.dotplot.tb | Dotplot with evenly spaced tiebreakers. | |
| lm.regsubsets | Evaluate lm model with highest adjusted $R^2$. | |
| ancova | Compute and plot oneway analysis of covariance | |
| multicomp.reverse | Force all comparisons in a "multicomp" object to have the same sign. | |
| extra | Miscellaneous functions that I wish were in or consistent between S-Plus and R. | |
| vif | Calculate the Variance Inflation Factor | |
| do.formula.trellis.xysplom | Interprets model formulas for xysplom and extended bwplots | |
| panel.bwplot.intermediate.hh | Panel functions for bwplot. | |
| summary.arma.loop | summary and print and subscript methods for tsdiagplot and related objects. | |
| NormalAndTplot | Specify plots to illustrate Normal and t Hypothesis Tests or Confidence Intervals. | |
| matrix.trellis | Convert a one-dimensional trellis object to a two-dimensional trellis object. This permits combineLimits and useOuterStrips to work. | |
| positioned-class | Class "positioned", extends "ordered" to specify the position for graphing the levels of a factor. | |
| mmc.mean | MMC (Mean--mean Multiple Comparisons) plots from the sufficient statistics for a one-way design. | |
| mmcPruneIsomeans | MMC plots in lattice---suppress isomeans grid lines for specified levels of the factor. | |
| OddsRatio | Calculate or plot the odds ratio for a 2x2 table of counts. | |
| logit | Logistic and odds functions and their inverses. | |
| norm.curve | plot a normal or a t-curve with both x and z axes. | |
| panel.bwplot.superpose | Panel function for bwplot that displays an entire box in the colors coded by groups. | |
| strip.xysplom | strip function that is able to place the correlation or regression coefficient into the strip label. | |
| NormalAndT.power | Construct a power graph based on the NormalAndT plot. | |
| mmcAspect | Control aspect ratio in MMC plots to maintain isomeans grid as a square. | |
| panel.axis.right | Right-justify right-axis tick labels. | |
| plot.hov | Homogeneity of Variance Plot | |
| xysplom | scatterplot matrix with potentially different sets of variables on the rows and columns. | |
| regrresidplot | Draw a plot of y vs x from a linear model object, with residuals indicated by lines or squares. | |
| position | Find or assign the implied position for graphing the levels of a factor. A new class "positioned", which inherits from "ordered" and "factor", is defined. | |
| panel.xysplom | panel method for xysplom. | |
| residual.plots.lattice | Construct four sets of regression plots: Y against X, residuals against X, partial residuals against X, partial residuals against each X adjusted for all the other X columns. | |
| plot.mmc.multicomp | MMC (Mean--mean Multiple Comparisons) plot. | |
| plot.multicomp | Multiple comparisons plot that gives independent user control over the appearance of the significant and not significant comparisons. | |
| print.TwoTrellisColumns | Print two conformable trellis plots in adjacent columns with user control of widths. | |
| useOuterStripsT2L1 | Three-factor generalization of latticeExtra::useOuterStrips | |
| pyramidLikert | Print a Likert plot as a Population Triangle | |
| panel.pairs.hh | Function based on S-Plus panel.pairs to add the subpanel.scales and panel.cex arguments. | |
| panel.bwplott | Extension to S-Plus trellis to allow transposed plots. | |
| panel.isomeans | isomeans grid for MMC plots. | |
| rbind.trellis | Extend matrix reshaping functions to trellis objects. | |
| tsacfplots | Coordinated time series and ACF and PCF plots. | |
| sufficient | Calculates the mean, standard deviation, and number of observations in each group of a data.frame that has one continuous variable and two factors. | |
| strip.background0 | Turn off the coloring in the trellis strip labels. Color 0 is the background color. | |
| panel.ci.plot | Default Panel Function for ci.plot | |
| seqplot.forecast | seqplot with confidence bands for the forecast region. | |
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Details
| Type | Package |
| Date | 2014-12-14 |
| License | GPL (>= 2) |
| Packaged | 2014-12-16 23:03:18 UTC; rmh |
| NeedsCompilation | no |
| Repository | CRAN |
| Date/Publication | 2014-12-17 02:28:55 |
| suggests | abind , car , methods , mvtnorm , RcmdrPlugin , RcmdrPlugin.HH |
| depends | base (>= 3.0.2) , grid , gridExtra , lattice , latticeExtra , multcomp , R (>= 3.0.2) , stats |
| imports | colorspace , leaps , Rcmdr , RColorBrewer , reshape2 , vcd |
| Contributors | Richard Heiberger |
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