hlaCheckAllele

two alleles for the first individual, like
        <code>c("A/G", "C/G")</code>

allele1

two alleles for the second individual, like
        <code>c("A/G", "C/G")</code>

allele2


    Check SNP reference and non-reference alleles.


Genetics

It is a software package for imputing HLA types using SNP data,
and relies on a training set of HLA and SNP genotypes. HIBAG can be used
by researchers with published parameter estimates instead of requiring
access to large training sample datasets. It combines the concepts of
attribute bagging, an ensemble classifier method, with haplotype inference
for SNPs and HLA types. Attribute bagging is a technique which improves
the accuracy and stability of classifier ensembles using bootstrap
aggregating and random variable selection.

Xiuwen Zheng

HIBAG

HLA Genotype Imputation with Attribute Bagging

hlaCheckAllele function

Check SNP reference and non-reference alleles.

hlaCheckAllele: Check SNP alleles

Description

Usage

Arguments

Value

See Also

Examples