hlaLociInfo

the human genome reference: "hg18", "hg19" (default),
        "hg20"; "auto" refers to "hg19"; "auto-silent" refers to "hg19" without
        any warning

assembly


    To get the starting and ending positions in basepair of HLA loci.


Genetics

It is a software package for imputing HLA types using SNP data,
and relies on a training set of HLA and SNP genotypes. HIBAG can be used
by researchers with published parameter estimates instead of requiring
access to large training sample datasets. It combines the concepts of
attribute bagging, an ensemble classifier method, with haplotype inference
for SNPs and HLA types. Attribute bagging is a technique which improves
the accuracy and stability of classifier ensembles using bootstrap
aggregating and random variable selection.

Xiuwen Zheng

HIBAG

HLA Genotype Imputation with Attribute Bagging

hlaLociInfo function

To get the starting and ending positions in basepair of HLA loci.

hlaLociInfo: HLA Locus Information

Description

Usage

Arguments

Value

References

Examples