HMP (version 2.0.1)

Plot.MDS: Multidimensional Scaling Plot of Microbiome Data

Description

Plots any number of data sets on an MDS plot.

Usage

Plot.MDS(group.data, main = "Group MDS", retCords = FALSE)

Arguments

group.data

A list of matrices of taxonomic counts(columns) for each sample(rows).

main

A string to be used as the plots title.

retCords

A boolean to return the mds coordinates or not.

Value

A MDS plot and possibly the x-y coordinates for every point.

Examples

# NOT RUN {
	data(saliva)
	data(throat)
	data(tonsils)
	
	### Combine the data sets into a single list
	group.data <- list(saliva, throat, tonsils)
	
	Plot.MDS(group.data)
# }