example_hap1

<p>Example genotype data for the first genome of 8 SNPs for 5,000 individuals.</p>

datasets

Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.

Yaoling Yang

HTRX

Haplotype Trend Regression with eXtra Flexibility (HTRX)

Daniel Lawson

example_hap1 function

<p>A data frame with 5,000 observations on 8 binary variables named <code>SNP1</code>-<code>SNP8</code>
  ("0" denotes the reference allele while "1" denotes the alternative allele).</p>

example_hap1: Example genotype data for the first genome

Description

Usage

Arguments

Format

Examples