htrx_nfeatures

The total number of features in principle from haplotypes (i.e. interactions between SNPs)
generated by Haplotype Trend Regression with eXtra flexibility (HTRX) .

Detection of haplotype patterns that include single nucleotide polymorphisms (SNPs) and non-contiguous haplotypes that are associated with a phenotype. Methods for implementing HTRX are described in Yang Y, Lawson DJ (2023) <doi:10.1093/bioadv/vbad038> and Barrie W, Yang Y, Irving-Pease E.K, et al (2024) <doi:10.1038/s41586-023-06618-z>.

Yaoling Yang

HTRX

Haplotype Trend Regression with eXtra Flexibility (HTRX)

Daniel Lawson

htrx_nfeatures function

<dl><dt>nsnp</dt>
<dd>a positive integer giving the number of single nucleotide polymorphisms (SNPs) included in the haplotypes.</dd>
<dt>max_int</dt>
<dd>a positive integer which specifies the maximum number of SNPs that can interact.
If no value is given (by default), interactions between all the SNPs will be considered.</dd>
<dt>htr</dt>
<dd>logical. If <code>htr=TRUE</code>, the function returns the total number of
features for HTR. By default, <code>htr=FALSE</code>.</dd></dl>

Arguments

Total number of features for HTRX — htrx_nfeatures

<dl>

<dt>nsnp</dt>
<dd>a positive integer giving the number of single nucleotide polymorphisms (SNPs) included in the haplotypes.</dd>


<dt>max_int</dt>
<dd>a positive integer which specifies the maximum number of SNPs that can interact.
If no value is given (by default), interactions between all the SNPs will be considered.</dd>


<dt>htr</dt>
<dd>logical. If <code>htr=TRUE</code>, the function returns the total number of
features for HTR. By default, <code>htr=FALSE</code>.</dd>

</dl>

htrx_nfeatures: Total number of features for HTRX

Description

Usage

Value

Arguments

Details

Examples