HTSSIP (version 1.4.1)

physeq_list_ord: calculating ordinations from a list of distance matrices

Description

For each dist object in a provided list, the fucntion calculates an ordination with the phyloseq::ordinate function.

Usage

physeq_list_ord(physeq_l, physeq_l_d, ord_method = "NMDS")

Arguments

physeq_l

A list of phyloseq objects

physeq_l_d

A list of dist objects

ord_method

See phyloseq::ordinate

Value

List of ordination objects

Examples

# NOT RUN {
data(physeq_S2D2_l)
# }
# NOT RUN {
# make a list of beta diversity distance matrix objects
physeq_S2D2_l_d = physeq_list_betaDiv(physeq_S2D2_l)
# make a list of ordinations
physeq_S2D2_l_d_ord = physeq_list_ord(physeq_S2D2_l, physeq_S2D2_l_d)
# }
# NOT RUN {
# }