qSIP_atom_excess_format

physeq

An expression for identifying unlabeled control
samples in the phyloseq object (eg., "Substrate=='12C-Con'")

control_expr

Which column in the phyloseq sample data designates
replicate treatments

treatment_rep

Reformat a phyloseq object of qSIP_atom_excess analysis

Functions for analyzing high throughput sequencing
stable isotope probing (HTS-SIP) data.
Analyses include high resolution stable isotope probing (HR-SIP),
multi-window high resolution stable isotope probing (MW-HR-SIP),
and quantitative stable isotope probing (q-SIP).

qSIP_atom_excess_format: Reformat a phyloseq object of qSIP_atom_excess analysis

Description

Usage

Arguments

Value