writeHTSAHtmlTab

enrichmentAnalysis


a character vector specifying which tab to generate, "GSCA", "NWA" or both



a single character value specifying the name of the html file where
the head message will be stored


htmlfile


a single character value specifying the relative path from current 
html file to the root directory


rootdir


a single logical value specifying whether to add an index tab or not


index

internal

This package provides classes and methods for gene set
over-representation, enrichment and network analyses on
high-throughput screens. The over-representation analysis is
performed based on hypergeometric tests. The enrichment
analysis is based on the GSEA algorithm (Subramanian et al.
PNAS 2005). The network analysis identifies enriched
subnetworks based on algorithms from the BioNet package
(Beisser et al., Bioinformatics 2010). A pipeline is also
specifically designed for cellHTS2 object to perform
integrative network analyses of high-throughput RNA
interference screens. The users can build their own analysis
pipeline for their own data set based on this package.

Xin Wang

HTSanalyzeR

Gene set over-representation, enrichment and network analyses
for high-throughput screens

writeHTSAHtmlTab function

a character vector specifying which tab to generate, "GSCA", "NWA" or both

a single character value specifying the name of the html file where
the head message will be stored

a single character value specifying the relative path from current 
html file to the root directory

a single logical value specifying whether to add an index tab or not

writeHTSAHtmlTab: Write tabs to report htmls

Description

Usage

Arguments

Details