HTSeqGenie (version 4.2.0)

calculateTargetLengths: Plot target length for paired end

Description

Calculate and plot a histogram of mapped target lengths after trimmming of trim/2 of the data points at the lower and upper end of the distribution

Usage

calculateTargetLengths(bamfile, save_dir, trim = 0.4)

Arguments

bamfile

Path to a bam file

save_dir

Path to a piplein results dir

trim

Amount of data to be trimmed at the edges

Value

Target length table and writes two files in save_dir/reports/images/TargetLenghts.[pdf|png]"