HTSeqGenie (version 4.2.0)

checkPicardJar: checkPicardJar

Description

Check for a jar file from picard tools

Usage

checkPicardJar(toolname, path = getOption("picard.path"))

Arguments

toolname

Name of the Picard Tool, e.g. MarkDuplicates

path

Path to folder containing picard jars

Value

TRUE if tool can be called, FALSE otherwise

Details

Call a tool from picard and see if it responds.