HTSeqGenie (version 4.2.0)

excludeVariantsByRegions: Filter variants by regions

Description

Filter variants by regions

Usage

excludeVariantsByRegions(variants, mask)

Arguments

variants

Variants as Vranges, GRanges or VCF object

mask

region to mask, given as GRanges

Value

The filtered variants

Details

This function can be used to filter variants in a given region, e.g. low complexity and repeat regions