HTSeqGenie (version 4.2.0)

filterByLength: Filter reads by length

Description

Checks whether reads have at least a length of minlength. Useful values are zero the rid of empty reads or 12 to match the gsnap k-mer size.

Usage

filterByLength(lreads, minlength = 12, paired = FALSE)

Arguments

lreads

A set of reads as ShortReadQ object

minlength

Minimum length

paired

Indicates whether lreads has one of two elements

Value

A boolean vector indicating whether read passes filter